miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 23133 0.71 0.460477
Target:  5'- -cGGGACccgcGCCuGCCgaGCUCCGCgGCCg -3'
miRNA:   3'- caUCCUGc---UGG-UGGa-CGAGGCGgCGG- -5'
5622 3' -59.7 NC_001806.1 + 92321 0.71 0.460477
Target:  5'- -gGGGGCGGCUAUCUGCgCCcCCaGCCu -3'
miRNA:   3'- caUCCUGCUGGUGGACGaGGcGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 22609 0.71 0.497221
Target:  5'- -gGGGuCG-CCGCCgucgCCGCCGCCg -3'
miRNA:   3'- caUCCuGCuGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 49707 0.71 0.497221
Target:  5'- uGUGGGACGAgU-CCgugcGCUCCGCCcuaGCCc -3'
miRNA:   3'- -CAUCCUGCUgGuGGa---CGAGGCGG---CGG- -5'
5622 3' -59.7 NC_001806.1 + 79744 0.7 0.506614
Target:  5'- -aGGGuugGCGGCCGCCUGCccUCCccgacacgGUCGCCc -3'
miRNA:   3'- caUCC---UGCUGGUGGACG--AGG--------CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 121569 0.7 0.52562
Target:  5'- -gGGGGCuGCgAguCCUGCgccCCGCCGCCc -3'
miRNA:   3'- caUCCUGcUGgU--GGACGa--GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 21561 0.7 0.52562
Target:  5'- --cGGACcccacgGACCGCCUGUcgCCGCgccCGCCg -3'
miRNA:   3'- cauCCUG------CUGGUGGACGa-GGCG---GCGG- -5'
5622 3' -59.7 NC_001806.1 + 74366 0.7 0.532336
Target:  5'- -gAGGACcuGGCgGCCUgGCUCuccguccugacggaCGCCGCCa -3'
miRNA:   3'- caUCCUG--CUGgUGGA-CGAG--------------GCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 23951 0.7 0.535224
Target:  5'- cUGGGGgGGCCGCCggagUGgUCCGCCGa- -3'
miRNA:   3'- cAUCCUgCUGGUGG----ACgAGGCGGCgg -5'
5622 3' -59.7 NC_001806.1 + 74153 0.7 0.544889
Target:  5'- -cAGGccagcgacaacaACGACCGCCgguuucacgugGCUUCgGCCGCCg -3'
miRNA:   3'- caUCC------------UGCUGGUGGa----------CGAGG-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 26494 0.7 0.544889
Target:  5'- -cAGGagcgcgcccGCGGCCGCCccg-CCGCCGCCc -3'
miRNA:   3'- caUCC---------UGCUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 4441 0.7 0.544889
Target:  5'- -gGGGGCGGcguCCGCCcggggGCUgCCGgCGCCg -3'
miRNA:   3'- caUCCUGCU---GGUGGa----CGA-GGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 2300 0.7 0.544889
Target:  5'- ---cGGCGGCCcccCCgagGCcCCGCCGCCg -3'
miRNA:   3'- caucCUGCUGGu--GGa--CGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 110935 0.7 0.544889
Target:  5'- gGUGGuGGCGcCgGCCUGUaUCCugGCCGCCa -3'
miRNA:   3'- -CAUC-CUGCuGgUGGACG-AGG--CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 23886 0.7 0.544889
Target:  5'- -gAGGACGugCGCgugguggugCUGUacucgCCGCUGCCg -3'
miRNA:   3'- caUCCUGCugGUG---------GACGa----GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 9986 0.7 0.55461
Target:  5'- --cGGA-GGCCGCCUGC-CaCGCCaGCCc -3'
miRNA:   3'- cauCCUgCUGGUGGACGaG-GCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 22726 0.7 0.55461
Target:  5'- -gGGGGCGACgACCccGacgCCGCcCGCCa -3'
miRNA:   3'- caUCCUGCUGgUGGa-Cga-GGCG-GCGG- -5'
5622 3' -59.7 NC_001806.1 + 22454 0.7 0.55461
Target:  5'- ---cGGCGGCCGCCgugGC-CaugaGCCGCCg -3'
miRNA:   3'- caucCUGCUGGUGGa--CGaGg---CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 135545 0.7 0.55461
Target:  5'- -cAGGGCGGcugccgcauCCACCggucacgGaCUCgGCCGCCa -3'
miRNA:   3'- caUCCUGCU---------GGUGGa------C-GAGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3180 0.69 0.564382
Target:  5'- cGgcGGccACGGCgGCCUcGCUgCCGCCgGCCa -3'
miRNA:   3'- -CauCC--UGCUGgUGGA-CGA-GGCGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.