miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 95775 0.69 0.564382
Target:  5'- -cAGGugGACCcggcCCUGCUCC-CCaGCa -3'
miRNA:   3'- caUCCugCUGGu---GGACGAGGcGG-CGg -5'
5622 3' -59.7 NC_001806.1 + 3180 0.69 0.564382
Target:  5'- cGgcGGccACGGCgGCCUcGCUgCCGCCgGCCa -3'
miRNA:   3'- -CauCC--UGCUGgUGGA-CGA-GGCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 81411 0.69 0.564382
Target:  5'- cGUGGGccaGACCAagguCCgucaGCgCCGCCGCCu -3'
miRNA:   3'- -CAUCCug-CUGGU----GGa---CGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3000 0.69 0.566342
Target:  5'- -cGGcGGCGGCCGCCagcgcgucggcgGCguccggugcgcuggCCGCCGCCg -3'
miRNA:   3'- caUC-CUGCUGGUGGa-----------CGa-------------GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 26930 0.69 0.574198
Target:  5'- -cGGGuGCG-CCACCUGgugucugggcCUCgGCCGCCc -3'
miRNA:   3'- caUCC-UGCuGGUGGAC----------GAGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 90937 0.69 0.574198
Target:  5'- -gAGGGCG-CCGCC--CUCC-CCGCCg -3'
miRNA:   3'- caUCCUGCuGGUGGacGAGGcGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 5886 0.69 0.578135
Target:  5'- -cGGGACGgcgggcggcccaaggGCCGCCcGCcUUGCCGCCc -3'
miRNA:   3'- caUCCUGC---------------UGGUGGaCGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 38031 0.69 0.583066
Target:  5'- -cGGGAccaccgcgacccCGACC-CCUGCgacgcccacggcgUCCGCCGCg -3'
miRNA:   3'- caUCCU------------GCUGGuGGACG-------------AGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 16489 0.69 0.584053
Target:  5'- -gGGGGCuuGCCGCCgcggcugaugGCUCgaGCCGCCu -3'
miRNA:   3'- caUCCUGc-UGGUGGa---------CGAGg-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 49562 0.69 0.584053
Target:  5'- -gAGGACGACUACCcgGaagCCGUCggGCCg -3'
miRNA:   3'- caUCCUGCUGGUGGa-Cga-GGCGG--CGG- -5'
5622 3' -59.7 NC_001806.1 + 24790 0.69 0.593941
Target:  5'- ---cGACGACgGCCcggggGCcCUGCCGCCg -3'
miRNA:   3'- caucCUGCUGgUGGa----CGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 126874 0.69 0.593941
Target:  5'- -gAGGACGG-CGCCgggGCUCUcgggGCCGCa -3'
miRNA:   3'- caUCCUGCUgGUGGa--CGAGG----CGGCGg -5'
5622 3' -59.7 NC_001806.1 + 41626 0.69 0.603855
Target:  5'- uGUGGGGC--CCugCUGUUCCGUgGCg -3'
miRNA:   3'- -CAUCCUGcuGGugGACGAGGCGgCGg -5'
5622 3' -59.7 NC_001806.1 + 31850 0.69 0.603855
Target:  5'- uGUGGGuguuaaguuuccGCGAgCGCCUGC-CCGCCcggacugaccugGCCu -3'
miRNA:   3'- -CAUCC------------UGCUgGUGGACGaGGCGG------------CGG- -5'
5622 3' -59.7 NC_001806.1 + 62178 0.69 0.612795
Target:  5'- -cGGGGCacuuuggaaucugGAUCGCCaGgUCCGCCGUCg -3'
miRNA:   3'- caUCCUG-------------CUGGUGGaCgAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 111234 0.68 0.623736
Target:  5'- uGUGGGugGCGGCgGCggacaGCUuuGCCGCCu -3'
miRNA:   3'- -CAUCC--UGCUGgUGga---CGAggCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 83928 0.68 0.623736
Target:  5'- -gGGGACaGCUGCUguaCUCgCGCCGCCg -3'
miRNA:   3'- caUCCUGcUGGUGGac-GAG-GCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 52457 0.68 0.632694
Target:  5'- -cGGGGCcgcccuGGCCGCggauCUGCUCCGCaacggggCGCCg -3'
miRNA:   3'- caUCCUG------CUGGUG----GACGAGGCG-------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 150923 0.68 0.632694
Target:  5'- ---cGAUGACCGCCUcgGcCUCCGCCacccggcGCCg -3'
miRNA:   3'- caucCUGCUGGUGGA--C-GAGGCGG-------CGG- -5'
5622 3' -59.7 NC_001806.1 + 103116 0.68 0.633689
Target:  5'- -gGGGAgcuCGGCCGCCUGCauggcggcguucUCCagggcagcggcaGCCGCUg -3'
miRNA:   3'- caUCCU---GCUGGUGGACG------------AGG------------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.