miRNA display CGI


Results 41 - 60 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 78596 0.67 0.712629
Target:  5'- -cGGGccagcACG-UCGCCgUGCcggCCGCCGCCa -3'
miRNA:   3'- caUCC-----UGCuGGUGG-ACGa--GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 126132 0.67 0.712629
Target:  5'- --cGGACGACgGCg-GCgaggCCGgCGCCg -3'
miRNA:   3'- cauCCUGCUGgUGgaCGa---GGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 5125 0.67 0.712629
Target:  5'- -cGGGGCG-CUGCUUGUucUCCGaCGCCa -3'
miRNA:   3'- caUCCUGCuGGUGGACG--AGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3861 0.67 0.702902
Target:  5'- gGUGGGGC-ACgGCCcGCgccaCGCUGCCg -3'
miRNA:   3'- -CAUCCUGcUGgUGGaCGag--GCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 149936 0.67 0.701926
Target:  5'- -gGGGGCGGCCcgagucuGCCUGg-CUGCUGCg -3'
miRNA:   3'- caUCCUGCUGG-------UGGACgaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 53907 0.67 0.693118
Target:  5'- -cGGGGCgcuacagccgccGACCGCCUGCUCgUGCU-CCa -3'
miRNA:   3'- caUCCUG------------CUGGUGGACGAG-GCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 132072 0.67 0.693118
Target:  5'- cGUGGGGCccgcccGCCGCCc-CUCgCGCCGCUc -3'
miRNA:   3'- -CAUCCUGc-----UGGUGGacGAG-GCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 2700 0.67 0.693118
Target:  5'- -gGGGGCuGCCGCCg---CCaGCCGCCc -3'
miRNA:   3'- caUCCUGcUGGUGGacgaGG-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 98141 0.67 0.683287
Target:  5'- ----cGCGGCCcgggGCCUGCUacaGCCGCCc -3'
miRNA:   3'- cauccUGCUGG----UGGACGAgg-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3645 0.67 0.683287
Target:  5'- -cGGcGGCGACCcccucgucAUCUGCgCCGgCGCCg -3'
miRNA:   3'- caUC-CUGCUGG--------UGGACGaGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 66430 0.67 0.683287
Target:  5'- gGUGGGGCGcCC-CCgcaGgUCCGgCUGCCa -3'
miRNA:   3'- -CAUCCUGCuGGuGGa--CgAGGC-GGCGG- -5'
5622 3' -59.7 NC_001806.1 + 131875 0.67 0.683287
Target:  5'- --cGuGGCGGCCGCCcGCgCCGCgacgaCGCCg -3'
miRNA:   3'- cauC-CUGCUGGUGGaCGaGGCG-----GCGG- -5'
5622 3' -59.7 NC_001806.1 + 30471 0.67 0.683287
Target:  5'- ---cGGCG-CCGCCccgcucccCUCCGCCGCCu -3'
miRNA:   3'- caucCUGCuGGUGGac------GAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 61423 0.67 0.683287
Target:  5'- cGUAGuuuucGAUGGCCGCCaGCgCCGCCGg- -3'
miRNA:   3'- -CAUC-----CUGCUGGUGGaCGaGGCGGCgg -5'
5622 3' -59.7 NC_001806.1 + 5324 0.68 0.673415
Target:  5'- -aGGGACGGCCGaucccCCUcccgcGCUUCGuCCGCg -3'
miRNA:   3'- caUCCUGCUGGU-----GGA-----CGAGGC-GGCGg -5'
5622 3' -59.7 NC_001806.1 + 41690 0.68 0.673415
Target:  5'- -gGGGGCGGCgUGCC-GC-CCGCCGUg -3'
miRNA:   3'- caUCCUGCUG-GUGGaCGaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 112949 0.68 0.663512
Target:  5'- -gGGGAagGACCGCCaggUGCUgCGCCuGUCu -3'
miRNA:   3'- caUCCUg-CUGGUGG---ACGAgGCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 106102 0.68 0.663512
Target:  5'- ---cGAaGACCuACCUGCUCgGCCgGCCc -3'
miRNA:   3'- caucCUgCUGG-UGGACGAGgCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 70397 0.68 0.663512
Target:  5'- -gAGGACG-CCAUCgUGCUgCUGCgGCUg -3'
miRNA:   3'- caUCCUGCuGGUGG-ACGA-GGCGgCGG- -5'
5622 3' -59.7 NC_001806.1 + 61113 0.68 0.663512
Target:  5'- --uGGACgGACCugguuaCUGCUUuuugCGCCGCCu -3'
miRNA:   3'- cauCCUG-CUGGug----GACGAG----GCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.