miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 30293 0.65 0.786509
Target:  5'- gGgcGGAgcCGGCCGCCcGCcCCGCggacgcgCGCCg -3'
miRNA:   3'- -CauCCU--GCUGGUGGaCGaGGCG-------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 116471 0.66 0.750804
Target:  5'- --cGGACGugCGCCUGgaUUCGCUGgaCCu -3'
miRNA:   3'- cauCCUGCugGUGGACg-AGGCGGC--GG- -5'
5622 3' -59.7 NC_001806.1 + 20730 0.66 0.741387
Target:  5'- -gGGGGCGggggGCCGgCgGcCUCCGCUGCUc -3'
miRNA:   3'- caUCCUGC----UGGUgGaC-GAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 26654 0.66 0.769333
Target:  5'- -gAGGccCGGcCCACCg---CCGCCGCCc -3'
miRNA:   3'- caUCCu-GCU-GGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 73460 0.66 0.741387
Target:  5'- -cGGGGUGGCCgGCCcGg-CCGCCGCCc -3'
miRNA:   3'- caUCCUGCUGG-UGGaCgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 122425 0.66 0.741387
Target:  5'- -cAGGaACGugUugACCUGCUCCGCgugGUCc -3'
miRNA:   3'- caUCC-UGCugG--UGGACGAGGCGg--CGG- -5'
5622 3' -59.7 NC_001806.1 + 134673 0.66 0.760122
Target:  5'- -cAGGACcGCCACC-GCgaaGCCGCg -3'
miRNA:   3'- caUCCUGcUGGUGGaCGaggCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 84076 0.66 0.750804
Target:  5'- -cGGGGCc-CCAgCUGCgcgCUGCCGCg -3'
miRNA:   3'- caUCCUGcuGGUgGACGa--GGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 1339 0.66 0.760122
Target:  5'- -gGGGGCGugGCCaaGCCcGcCUCCGCCcCCa -3'
miRNA:   3'- caUCCUGC--UGG--UGGaC-GAGGCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 24599 0.66 0.760122
Target:  5'- -gAGGAgGcCCACUcGCa-CGCCGCCu -3'
miRNA:   3'- caUCCUgCuGGUGGaCGagGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 138951 0.66 0.769333
Target:  5'- -gGGGAaccggaGACCACCg---CCGCCGUUc -3'
miRNA:   3'- caUCCUg-----CUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 71936 0.66 0.749867
Target:  5'- -gGGGcgaguggacgcgcGCGACCGcgggcCCUGggCCGCCGCg -3'
miRNA:   3'- caUCC-------------UGCUGGU-----GGACgaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 24095 0.66 0.759195
Target:  5'- -cAGGGCGugCugCUGCUguccaCGCgggaccuggccuuCGCCg -3'
miRNA:   3'- caUCCUGCugGugGACGAg----GCG-------------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 27245 0.66 0.738544
Target:  5'- -cAGGGCgGGCCGCCUcgggggcgggacugGCcaaucggCgGCCGCCa -3'
miRNA:   3'- caUCCUG-CUGGUGGA--------------CGa------GgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 115497 0.66 0.760122
Target:  5'- cGUGGaGACGGguucggcgguguCCACg-GCcaCCGCCGCCa -3'
miRNA:   3'- -CAUC-CUGCU------------GGUGgaCGa-GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 23566 0.66 0.741387
Target:  5'- -cGGGGCccaGCCACaCggcgGCgcccgcggCCGCCGCCc -3'
miRNA:   3'- caUCCUGc--UGGUG-Ga---CGa-------GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 22306 0.66 0.760122
Target:  5'- -gGGGACguggcgcugGACCagGCCUGCUUccggaucucgggCGCCGCg -3'
miRNA:   3'- caUCCUG---------CUGG--UGGACGAG------------GCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 33759 0.66 0.760122
Target:  5'- -cGGcGGCGGCUGCggcggCUGCggCgGCCGCCg -3'
miRNA:   3'- caUC-CUGCUGGUG-----GACGa-GgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 22883 0.66 0.760122
Target:  5'- -cGGGGCuGGCCgggGCCcgGC-CCGCCaGCCc -3'
miRNA:   3'- caUCCUG-CUGG---UGGa-CGaGGCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 45118 0.66 0.760122
Target:  5'- aGUAGcGACGGCCGugUGC-CaGUCGCCa -3'
miRNA:   3'- -CAUC-CUGCUGGUggACGaGgCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.