miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 151695 0.74 0.308598
Target:  5'- -cGGGGgGGCCcgGgCUGC-CCGCCGCCa -3'
miRNA:   3'- caUCCUgCUGG--UgGACGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 151458 0.68 0.663512
Target:  5'- -cGGGGCGGCCGCgggcgcGCUCCuGaCCGCg -3'
miRNA:   3'- caUCCUGCUGGUGga----CGAGG-C-GGCGg -5'
5622 3' -59.7 NC_001806.1 + 150923 0.68 0.632694
Target:  5'- ---cGAUGACCGCCUcgGcCUCCGCCacccggcGCCg -3'
miRNA:   3'- caucCUGCUGGUGGA--C-GAGGCGG-------CGG- -5'
5622 3' -59.7 NC_001806.1 + 149936 0.67 0.701926
Target:  5'- -gGGGGCGGCCcgagucuGCCUGg-CUGCUGCg -3'
miRNA:   3'- caUCCUGCUGG-------UGGACgaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 148024 0.66 0.778429
Target:  5'- -cGGGA--GCCGCCg---CCGCCGCUg -3'
miRNA:   3'- caUCCUgcUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 147660 0.74 0.308598
Target:  5'- -cGGGGCgGGCgGCCgGCUCCGCC-CCg -3'
miRNA:   3'- caUCCUG-CUGgUGGaCGAGGCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 144185 0.73 0.359808
Target:  5'- ---cGGCGGCCGCCgcaGCcgccgcagCCGCCGCCg -3'
miRNA:   3'- caucCUGCUGGUGGa--CGa-------GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 141487 0.68 0.653585
Target:  5'- aGUGGGACG-CCGCC-GCcCCG-CGCUu -3'
miRNA:   3'- -CAUCCUGCuGGUGGaCGaGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 138951 0.66 0.769333
Target:  5'- -gGGGAaccggaGACCACCg---CCGCCGUUc -3'
miRNA:   3'- caUCCUg-----CUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 135545 0.7 0.55461
Target:  5'- -cAGGGCGGcugccgcauCCACCggucacgGaCUCgGCCGCCa -3'
miRNA:   3'- caUCCUGCU---------GGUGGa------C-GAGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 134673 0.66 0.760122
Target:  5'- -cAGGACcGCCACC-GCgaaGCCGCg -3'
miRNA:   3'- caUCCUGcUGGUGGaCGaggCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 132186 0.67 0.716502
Target:  5'- cGUGGGcgcgccugGCGGCCAUUcgcgacaccccccagUGCgcgUCCGCCGCUu -3'
miRNA:   3'- -CAUCC--------UGCUGGUGG---------------ACG---AGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 132072 0.67 0.693118
Target:  5'- cGUGGGGCccgcccGCCGCCc-CUCgCGCCGCUc -3'
miRNA:   3'- -CAUCCUGc-----UGGUGGacGAG-GCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 131875 0.67 0.683287
Target:  5'- --cGuGGCGGCCGCCcGCgCCGCgacgaCGCCg -3'
miRNA:   3'- cauC-CUGCUGGUGGaCGaGGCG-----GCGG- -5'
5622 3' -59.7 NC_001806.1 + 126874 0.69 0.593941
Target:  5'- -gAGGACGG-CGCCgggGCUCUcgggGCCGCa -3'
miRNA:   3'- caUCCUGCUgGUGGa--CGAGG----CGGCGg -5'
5622 3' -59.7 NC_001806.1 + 126132 0.67 0.712629
Target:  5'- --cGGACGACgGCg-GCgaggCCGgCGCCg -3'
miRNA:   3'- cauCCUGCUGgUGgaCGa---GGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 123789 0.67 0.722291
Target:  5'- -cAGGACG-CCGCCgucucccGCUCCucccacgggucCCGCCa -3'
miRNA:   3'- caUCCUGCuGGUGGa------CGAGGc----------GGCGG- -5'
5622 3' -59.7 NC_001806.1 + 122425 0.66 0.741387
Target:  5'- -cAGGaACGugUugACCUGCUCCGCgugGUCc -3'
miRNA:   3'- caUCC-UGCugG--UGGACGAGGCGg--CGG- -5'
5622 3' -59.7 NC_001806.1 + 121569 0.7 0.52562
Target:  5'- -gGGGGCuGCgAguCCUGCgccCCGCCGCCc -3'
miRNA:   3'- caUCCUGcUGgU--GGACGa--GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 120360 0.66 0.778429
Target:  5'- -cGGcGACGACCuCCcgGC-CCGCUuuGCCg -3'
miRNA:   3'- caUC-CUGCUGGuGGa-CGaGGCGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.