miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 11397 0.66 0.989366
Target:  5'- aGGGAGGgcAuuGGCGuGcGUGACGaCCg -3'
miRNA:   3'- cCCCUCCaaUuuCUGC-C-CGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 14947 0.66 0.989366
Target:  5'- gGGGGAGGcagUGAGGaacgagaaaGCGGGguauguugaGGCGUCg -3'
miRNA:   3'- -CCCCUCCa--AUUUC---------UGCCCg--------CUGUAGg -5'
5622 5' -52.3 NC_001806.1 + 31010 0.66 0.989091
Target:  5'- gGGGGAcugccugcccauccuGGacaUGGAGACGGGgaacaucggggcguaCGugGUCCu -3'
miRNA:   3'- -CCCCU---------------CCa--AUUUCUGCCC---------------GCugUAGG- -5'
5622 5' -52.3 NC_001806.1 + 32864 0.66 0.987938
Target:  5'- aGGGGGGGggGAgaagcgagaacaGGAaaGGCGAUGgagCCc -3'
miRNA:   3'- -CCCCUCCaaUU------------UCUgcCCGCUGUa--GG- -5'
5622 5' -52.3 NC_001806.1 + 6078 0.66 0.987938
Target:  5'- cGGGGGcGGgcccgGgcGGCGGGgGGCGggucucUCCg -3'
miRNA:   3'- -CCCCU-CCaa---UuuCUGCCCgCUGU------AGG- -5'
5622 5' -52.3 NC_001806.1 + 22129 0.66 0.987787
Target:  5'- uGGGGGGcgcccGAGGCGGaggaggcGCGACG-CCg -3'
miRNA:   3'- cCCCUCCaau--UUCUGCC-------CGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 11438 0.66 0.987482
Target:  5'- gGGGGGGGUgcucggaugcgauuUGagcucggcuccGAGGCGGGCcAUggCCg -3'
miRNA:   3'- -CCCCUCCA--------------AU-----------UUCUGCCCGcUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 83670 0.66 0.986366
Target:  5'- cGGcGGGGUgcc---CGGGCGGCAUgCCc -3'
miRNA:   3'- cCC-CUCCAauuucuGCCCGCUGUA-GG- -5'
5622 5' -52.3 NC_001806.1 + 65290 0.66 0.986366
Target:  5'- cGGGGAGG---AGGAgGGG-GGCccCCa -3'
miRNA:   3'- -CCCCUCCaauUUCUgCCCgCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 57827 0.66 0.986366
Target:  5'- gGGcGGGGGUgc-GG-UGGGCGACcccGUCUu -3'
miRNA:   3'- -CC-CCUCCAauuUCuGCCCGCUG---UAGG- -5'
5622 5' -52.3 NC_001806.1 + 49497 0.66 0.986366
Target:  5'- uGGGGcGGGUcgGcGGuucGCGGGUGGCG-CCg -3'
miRNA:   3'- -CCCC-UCCAa-UuUC---UGCCCGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 143256 0.66 0.986366
Target:  5'- uGGGGGGGgauguGGGCGGGgGuGCGc-- -3'
miRNA:   3'- -CCCCUCCaauu-UCUGCCCgC-UGUagg -5'
5622 5' -52.3 NC_001806.1 + 6420 0.66 0.986033
Target:  5'- aGGGGGGGacgcgggggugGAGGAgGGGgGACGc-- -3'
miRNA:   3'- -CCCCUCCaa---------UUUCUgCCCgCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 99639 0.66 0.986033
Target:  5'- uGGGGGcGGUggcgggccuGGCGGGCaGGCAgCUg -3'
miRNA:   3'- -CCCCU-CCAauuu-----CUGCCCG-CUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 151282 0.66 0.984641
Target:  5'- gGGGGccGGGgccgGGGGGC-GGCGGCGgugggCCg -3'
miRNA:   3'- -CCCC--UCCaa--UUUCUGcCCGCUGUa----GG- -5'
5622 5' -52.3 NC_001806.1 + 33986 0.66 0.984641
Target:  5'- gGGGGucgccGGGgcAGGGGCGGG-GGCGUg- -3'
miRNA:   3'- -CCCC-----UCCaaUUUCUGCCCgCUGUAgg -5'
5622 5' -52.3 NC_001806.1 + 25238 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25136 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25170 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25102 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.