miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 23280 0.67 0.999999
Target:  5'- ----cGGGAGGGGcgcaAGCGCAAGagUCCCg -3'
miRNA:   3'- ucuuuCUUUUCCC----UUGUGUUUg-AGGG- -5'
5627 3' -44 NC_001806.1 + 25408 0.72 0.997897
Target:  5'- cGGGAGGGGgcGAGGGGcgguggugguGCGCGGGCgccCCCg -3'
miRNA:   3'- -UCUUUCUU--UUCCCU----------UGUGUUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 26171 0.67 0.999998
Target:  5'- cGGggGGAGGAGcGGccaGACGCcgaAAACgggCCCc -3'
miRNA:   3'- -UCuuUCUUUUC-CC---UUGUG---UUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 26829 0.74 0.994997
Target:  5'- cGGgcGggGAGGGGGCGCcgGAGCcCCCc -3'
miRNA:   3'- uCUuuCuuUUCCCUUGUG--UUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 27930 0.68 0.999988
Target:  5'- gGGAGGGGAAAggcGGGggUAUAAGuuagCCCu -3'
miRNA:   3'- -UCUUUCUUUU---CCCuuGUGUUUga--GGG- -5'
5627 3' -44 NC_001806.1 + 28674 0.72 0.999127
Target:  5'- uGGGGAGGAGccgcccgccauauuuGGGGGACGCcgugGGACcCCCg -3'
miRNA:   3'- -UCUUUCUUU---------------UCCCUUGUG----UUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 28750 0.7 0.999816
Target:  5'- aGGGAAGAAGAGGGGucgggauccaaaGgACGGAC-CCa -3'
miRNA:   3'- -UCUUUCUUUUCCCU------------UgUGUUUGaGGg -5'
5627 3' -44 NC_001806.1 + 28861 0.67 0.999998
Target:  5'- gGGggGGGAGAGGGG----GAACUCg- -3'
miRNA:   3'- -UCuuUCUUUUCCCUugugUUUGAGgg -5'
5627 3' -44 NC_001806.1 + 29021 0.72 0.99826
Target:  5'- uGGggGGGcgGGGGGACGCcGAC-CaCCa -3'
miRNA:   3'- -UCuuUCUuuUCCCUUGUGuUUGaG-GG- -5'
5627 3' -44 NC_001806.1 + 29655 0.66 0.999999
Target:  5'- aGGggGGggGAGGGAGgaAUAGGCg--- -3'
miRNA:   3'- -UCuuUCuuUUCCCUUg-UGUUUGaggg -5'
5627 3' -44 NC_001806.1 + 30416 0.74 0.99414
Target:  5'- cGGggGGGccgggcgugGAGGGuGGGCACGGGCccUCCCg -3'
miRNA:   3'- -UCuuUCU---------UUUCC-CUUGUGUUUG--AGGG- -5'
5627 3' -44 NC_001806.1 + 32166 0.67 0.999994
Target:  5'- -uGAAGGAGGGGGGGCGgu-GCUUCUu -3'
miRNA:   3'- ucUUUCUUUUCCCUUGUguuUGAGGG- -5'
5627 3' -44 NC_001806.1 + 32632 0.67 0.999994
Target:  5'- gGGggGGAAAAgaacGGGcuggugugcuguAACACGAGCccaCCCg -3'
miRNA:   3'- -UCuuUCUUUU----CCC------------UUGUGUUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 32860 0.68 0.999991
Target:  5'- aAGAAGGggGGGGGGAgaaGCGAgaacaggaaagGCgauggagCCCg -3'
miRNA:   3'- -UCUUUCuuUUCCCUUg--UGUU-----------UGa------GGG- -5'
5627 3' -44 NC_001806.1 + 33647 0.67 0.999999
Target:  5'- cGGgcGGggGGGGGGuguCGCGGGCcgucugcuggCCCg -3'
miRNA:   3'- -UCuuUCuuUUCCCUu--GUGUUUGa---------GGG- -5'
5627 3' -44 NC_001806.1 + 34485 0.7 0.999763
Target:  5'- gGGggGGAGAcggGGGGAAaGCAagGACacggCCCg -3'
miRNA:   3'- -UCuuUCUUU---UCCCUUgUGU--UUGa---GGG- -5'
5627 3' -44 NC_001806.1 + 34519 0.7 0.999859
Target:  5'- cGggGGGu--GGGAGCGCGGGCcgggCCg -3'
miRNA:   3'- uCuuUCUuuuCCCUUGUGUUUGa---GGg -5'
5627 3' -44 NC_001806.1 + 34789 0.75 0.987931
Target:  5'- gGGggGGggGGGGGGGCGgGAAaccaaguaggCCCg -3'
miRNA:   3'- -UCuuUCuuUUCCCUUGUgUUUga--------GGG- -5'
5627 3' -44 NC_001806.1 + 35054 0.72 0.999049
Target:  5'- gGGggGGAGAGGGGAGCcaguUAGAUUgCa -3'
miRNA:   3'- -UCuuUCUUUUCCCUUGu---GUUUGAgGg -5'
5627 3' -44 NC_001806.1 + 41246 0.69 0.999919
Target:  5'- uGGAGccGGcGAAAGGGGACG--GGCUCCUu -3'
miRNA:   3'- -UCUU--UC-UUUUCCCUUGUguUUGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.