miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 151279 0.73 0.418884
Target:  5'- -gGugGGGGCCGgggccggggggcggcGGCggugGGCCG-GGCCu -3'
miRNA:   3'- aaCugCUCCGGU---------------UCGa---UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4720 0.72 0.424171
Target:  5'- --aGCGGGGCCucccguucgcGGCcccgGGCCGGGGCCc -3'
miRNA:   3'- aacUGCUCCGGu---------UCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 50511 0.72 0.424171
Target:  5'- -cGugGGGGCCGAGCa---CGAGGCg -3'
miRNA:   3'- aaCugCUCCGGUUCGaucgGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 4608 0.72 0.433069
Target:  5'- -cGACGAGGUCGAuGac-GCCGAuGGCCg -3'
miRNA:   3'- aaCUGCUCCGGUU-CgauCGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 11840 0.72 0.433069
Target:  5'- -gGugGAGGCCugguuaggggcGGGUUGguauacgcucGCCGGGGCCa -3'
miRNA:   3'- aaCugCUCCGG-----------UUCGAU----------CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 137736 0.72 0.440265
Target:  5'- -cGACGAGGCCGGGCUccuuGGgCGucaccuccucacGGCCg -3'
miRNA:   3'- aaCUGCUCCGGUUCGA----UCgGCu-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 5107 0.72 0.460399
Target:  5'- -cGGUGGGGCCcGGggAGCCGGGGCg -3'
miRNA:   3'- aaCUGCUCCGGuUCgaUCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 23924 0.72 0.460399
Target:  5'- -gGGCGAGGaCCuGGCcGGCggCGGGGCCu -3'
miRNA:   3'- aaCUGCUCC-GGuUCGaUCG--GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22417 0.72 0.460399
Target:  5'- aUGGCGGccGGCC--GCUucGGCUGGGGCCu -3'
miRNA:   3'- aACUGCU--CCGGuuCGA--UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 59118 0.71 0.476285
Target:  5'- gUGACGAGG-UggGCUucgguggugagggcAGCCG-GGCCg -3'
miRNA:   3'- aACUGCUCCgGuuCGA--------------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 74599 0.71 0.479117
Target:  5'- -cGACGAcGG-CGGGCUGucGCCaGAGGCCa -3'
miRNA:   3'- aaCUGCU-CCgGUUCGAU--CGG-CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22767 0.71 0.479117
Target:  5'- -cGACGAcGCCGGGCgccgcGCCcAGGCCg -3'
miRNA:   3'- aaCUGCUcCGGUUCGau---CGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 30022 0.71 0.498201
Target:  5'- gUUGAagcgGAGGCgGGGC-GGCCGAggGGCCg -3'
miRNA:   3'- -AACUg---CUCCGgUUCGaUCGGCU--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 92459 0.71 0.498201
Target:  5'- --cGCGAGcGCCAAcGCgu-CCGAGGCCg -3'
miRNA:   3'- aacUGCUC-CGGUU-CGaucGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 14015 0.71 0.51176
Target:  5'- -gGACGAuagugucacacGGCCGGGCuaccgcgaucuuuauUgggGGCCGGGGCCa -3'
miRNA:   3'- aaCUGCU-----------CCGGUUCG---------------A---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 37768 0.71 0.517618
Target:  5'- -cGGCGGGcGCCuuucGCUccggGGCCGGGGCg -3'
miRNA:   3'- aaCUGCUC-CGGuu--CGA----UCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 32963 0.71 0.517618
Target:  5'- -gGGcCGGGGCCccuuGGGUccGCCGGGGCCc -3'
miRNA:   3'- aaCU-GCUCCGG----UUCGauCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 128420 0.71 0.526454
Target:  5'- -gGACGuaaaccagguGGGCC-AGCUGGCUGAugcgaugGGCCa -3'
miRNA:   3'- aaCUGC----------UCCGGuUCGAUCGGCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 27028 0.71 0.527439
Target:  5'- gUGGCgGAGGCCgAGGCggucaucgGGCCGugccugGGGCCc -3'
miRNA:   3'- aACUG-CUCCGG-UUCGa-------UCGGC------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 39537 0.71 0.527439
Target:  5'- -cGAUGcGGCCugcguAGUucaagagguaggUGGCCGGGGCCa -3'
miRNA:   3'- aaCUGCuCCGGu----UCG------------AUCGGCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.