miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 3' -66.3 NC_001806.1 + 16490 0.66 0.448638
Target:  5'- gGGGCuuGccGCCGCGGCugaugGCuCGAgCCGCCu -3'
miRNA:   3'- -UCCGggCc-CGGUGCCG-----CG-GCU-GGUGG- -5'
5630 3' -66.3 NC_001806.1 + 73138 0.66 0.448638
Target:  5'- cGGGCgaggacgaCGGGcCCACGGUuCCGGCguCCu -3'
miRNA:   3'- -UCCGg-------GCCC-GGUGCCGcGGCUGguGG- -5'
5630 3' -66.3 NC_001806.1 + 114923 0.66 0.457166
Target:  5'- uGGGCgUGGGCUACacCGCCGucgugGCCACg -3'
miRNA:   3'- -UCCGgGCCCGGUGccGCGGC-----UGGUGg -5'
5630 3' -66.3 NC_001806.1 + 83334 0.66 0.448638
Target:  5'- gGGGCuuuuggacaCCGGGCCcuuuuCcGCGgCGGCCAUCg -3'
miRNA:   3'- -UCCG---------GGCCCGGu----GcCGCgGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 33617 0.66 0.440198
Target:  5'- cGGCgCGGGgCGgGGgGCCGGauacCCACa -3'
miRNA:   3'- uCCGgGCCCgGUgCCgCGGCU----GGUGg -5'
5630 3' -66.3 NC_001806.1 + 89887 0.66 0.440198
Target:  5'- -uGCCUcucgcaGGGaccCCGCGuuGCCGGCCGCCg -3'
miRNA:   3'- ucCGGG------CCC---GGUGCcgCGGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 2231 0.66 0.44779
Target:  5'- cGGCCCGcacagccgguuGGCCAgGGCcGCCagcaggcaggacaGcCCGCCg -3'
miRNA:   3'- uCCGGGC-----------CCGGUgCCG-CGG-------------CuGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 127897 0.66 0.440198
Target:  5'- uAGGCgCGGGUgcaGCGGaGCaCGGCCauGCCg -3'
miRNA:   3'- -UCCGgGCCCGg--UGCCgCG-GCUGG--UGG- -5'
5630 3' -66.3 NC_001806.1 + 38025 0.66 0.440198
Target:  5'- cAGcCCCGGGaCCACcGCGaccCCGACC-CCu -3'
miRNA:   3'- -UCcGGGCCC-GGUGcCGC---GGCUGGuGG- -5'
5630 3' -66.3 NC_001806.1 + 115499 0.66 0.457166
Target:  5'- uGGagaCGGGUUcgGCGGUGUccaCGGCCACCg -3'
miRNA:   3'- uCCgg-GCCCGG--UGCCGCG---GCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 3870 0.66 0.457166
Target:  5'- cGGCCCGcGCCACGcUGCCGgugaugaaggaGCUGCUg -3'
miRNA:   3'- uCCGGGCcCGGUGCcGCGGC-----------UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 81929 0.66 0.492111
Target:  5'- cGGCCUcGGCCcCGuaCGCCucccggGACCGCCg -3'
miRNA:   3'- uCCGGGcCCGGuGCc-GCGG------CUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 55160 0.66 0.452038
Target:  5'- cAGGCCaaguaauacauucccUGGGUCGCGGgcgucaccuCGCCGAUaaucaGCCg -3'
miRNA:   3'- -UCCGG---------------GCCCGGUGCC---------GCGGCUGg----UGG- -5'
5630 3' -66.3 NC_001806.1 + 22934 0.66 0.440198
Target:  5'- cGGGCCCcgcuuccccGCCGCGccgcaCGCCGACgCGCCc -3'
miRNA:   3'- -UCCGGGcc-------CGGUGCc----GCGGCUG-GUGG- -5'
5630 3' -66.3 NC_001806.1 + 14320 0.66 0.440198
Target:  5'- -cGCCCccaGGaCUACGGCGCacaGcCCACCg -3'
miRNA:   3'- ucCGGGc--CC-GGUGCCGCGg--CuGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 3569 0.66 0.448638
Target:  5'- -cGCCCcaGGGCggcgaggaucccCGCGGCGCCGuACCcggcgggcACCg -3'
miRNA:   3'- ucCGGG--CCCG------------GUGCCGCGGC-UGG--------UGG- -5'
5630 3' -66.3 NC_001806.1 + 46630 0.66 0.446943
Target:  5'- cGGCCacggcgacucgaGGGCguucuGCGGCGUCGcgccCCACCg -3'
miRNA:   3'- uCCGGg-----------CCCGg----UGCCGCGGCu---GGUGG- -5'
5630 3' -66.3 NC_001806.1 + 147827 0.66 0.448638
Target:  5'- gGGGCCUGuggggagaGGCCGgGGgggaguCGCUGAUCACUa -3'
miRNA:   3'- -UCCGGGC--------CCGGUgCC------GCGGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 49244 0.66 0.456309
Target:  5'- gAGGCUcuggaggagauggCGGGCgACGaGcCGCCcGugCGCCg -3'
miRNA:   3'- -UCCGG-------------GCCCGgUGC-C-GCGG-CugGUGG- -5'
5630 3' -66.3 NC_001806.1 + 30843 0.66 0.445251
Target:  5'- cGGCCCccgcgcugcuucuGGGCCGCGGgggccgaggaagugUGCCcggaaGACgCGCCa -3'
miRNA:   3'- uCCGGG-------------CCCGGUGCC--------------GCGG-----CUG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.