miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 3' -66.3 NC_001806.1 + 58 0.66 0.457166
Target:  5'- gGGGCCCGuuuu-CGGCGuCUGGCCGCUc -3'
miRNA:   3'- -UCCGGGCccgguGCCGC-GGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 388 0.67 0.399409
Target:  5'- gGGGCCCGGGCUGCcacaGGUgaaaccaacagaGCaCGGCgCACUc -3'
miRNA:   3'- -UCCGGGCCCGGUG----CCG------------CG-GCUG-GUGG- -5'
5630 3' -66.3 NC_001806.1 + 1411 0.74 0.136442
Target:  5'- cGGCCCGuggccgaGGCCcagcgaaucccggGCGGCGCCGGCgGCa -3'
miRNA:   3'- uCCGGGC-------CCGG-------------UGCCGCGGCUGgUGg -5'
5630 3' -66.3 NC_001806.1 + 1456 0.68 0.353772
Target:  5'- aGGGCCCccGGGCCGuCGuCGUCG-CCGCg -3'
miRNA:   3'- -UCCGGG--CCCGGU-GCcGCGGCuGGUGg -5'
5630 3' -66.3 NC_001806.1 + 1522 0.73 0.173412
Target:  5'- aGGGCgCGGGCgcaaaagucccucCGCGGC-CCGcGCCACCg -3'
miRNA:   3'- -UCCGgGCCCG-------------GUGCCGcGGC-UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 1561 0.71 0.250787
Target:  5'- cGGgCCGGGCC--GGCGCgcACCGCCu -3'
miRNA:   3'- uCCgGGCCCGGugCCGCGgcUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 1685 0.73 0.161966
Target:  5'- -cGCCgGGcGCCAUGGCGUCGgugguccccgagGCCGCCg -3'
miRNA:   3'- ucCGGgCC-CGGUGCCGCGGC------------UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 1785 0.67 0.397039
Target:  5'- cGuGUCCGGGCCgaagcGCGuGCGCaCGcgguagcgcacguuGCCGCCg -3'
miRNA:   3'- uC-CGGGCCCGG-----UGC-CGCG-GC--------------UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 1918 0.75 0.133845
Target:  5'- cGGCCCGaGGCCagcaccguGCGGCGCaggucccgcGCCGCCg -3'
miRNA:   3'- uCCGGGC-CCGG--------UGCCGCGgc-------UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 2029 0.74 0.142794
Target:  5'- cGGGCCCgucggcGGGCCagucgcaggcgcgcACGGUGuuGACCACg -3'
miRNA:   3'- -UCCGGG------CCCGG--------------UGCCGCggCUGGUGg -5'
5630 3' -66.3 NC_001806.1 + 2231 0.66 0.44779
Target:  5'- cGGCCCGcacagccgguuGGCCAgGGCcGCCagcaggcaggacaGcCCGCCg -3'
miRNA:   3'- uCCGGGC-----------CCGGUgCCG-CGG-------------CuGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 2303 0.67 0.407373
Target:  5'- cGGCCCccccgaGGCCcCGcCGCCGGCCAgguCCu -3'
miRNA:   3'- uCCGGGc-----CCGGuGCcGCGGCUGGU---GG- -5'
5630 3' -66.3 NC_001806.1 + 2381 0.68 0.339401
Target:  5'- gGGGUCgGGGaUC-UGGCGCauccaGGCCGCCa -3'
miRNA:   3'- -UCCGGgCCC-GGuGCCGCGg----CUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 2423 0.71 0.224099
Target:  5'- cGGGCCCgaggcgcgcaggGGGCCAaagaGGCGgcccCCGGCgGCCc -3'
miRNA:   3'- -UCCGGG------------CCCGGUg---CCGC----GGCUGgUGG- -5'
5630 3' -66.3 NC_001806.1 + 2512 0.76 0.115781
Target:  5'- cGGCCUGGGCgGCGGgGgcgggcCCGGCgCACCg -3'
miRNA:   3'- uCCGGGCCCGgUGCCgC------GGCUG-GUGG- -5'
5630 3' -66.3 NC_001806.1 + 2562 0.68 0.353772
Target:  5'- aGGGCCCgcGGGUCAaacaugaGG-GCCGGUCGCCa -3'
miRNA:   3'- -UCCGGG--CCCGGUg------CCgCGGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 2616 0.66 0.473604
Target:  5'- uGGUCCGugagcucGGCCACGGCGCgCGGggaGCa -3'
miRNA:   3'- uCCGGGC-------CCGGUGCCGCG-GCUgg-UGg -5'
5630 3' -66.3 NC_001806.1 + 2652 0.74 0.147295
Target:  5'- uAGGCCUccaGGGCgGCGGcCGCgGgcGCCGCCg -3'
miRNA:   3'- -UCCGGG---CCCGgUGCC-GCGgC--UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 2692 0.71 0.224099
Target:  5'- uGGGCCCcggGGGCUGCcGcCGCCaGCCGCCc -3'
miRNA:   3'- -UCCGGG---CCCGGUGcC-GCGGcUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 2732 0.7 0.262175
Target:  5'- gGGGCCCucggcGGGCC--GGCGCgacaCGGCCACg -3'
miRNA:   3'- -UCCGGG-----CCCGGugCCGCG----GCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.