miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 3' -66.3 NC_001806.1 + 81929 0.66 0.492111
Target:  5'- cGGCCUcGGCCcCGuaCGCCucccggGACCGCCg -3'
miRNA:   3'- uCCGGGcCCGGuGCc-GCGG------CUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 64871 0.79 0.065653
Target:  5'- cGuCCCGGGCCACGGCGggaUCGGCCGCa -3'
miRNA:   3'- uCcGGGCCCGGUGCCGC---GGCUGGUGg -5'
5630 3' -66.3 NC_001806.1 + 26706 0.79 0.067313
Target:  5'- uGGGCCCGGGggGCGGgGCUGACC-CCu -3'
miRNA:   3'- -UCCGGGCCCggUGCCgCGGCUGGuGG- -5'
5630 3' -66.3 NC_001806.1 + 21917 0.79 0.070755
Target:  5'- cGGGCCCGcGCgGCGGUgGCCGGCCGCg -3'
miRNA:   3'- -UCCGGGCcCGgUGCCG-CGGCUGGUGg -5'
5630 3' -66.3 NC_001806.1 + 30438 0.78 0.074365
Target:  5'- uGGGCaCGGGCCcucccGCGGCGCCGcccccuccggcGCCGCCc -3'
miRNA:   3'- -UCCGgGCCCGG-----UGCCGCGGC-----------UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 5600 0.78 0.07455
Target:  5'- gGGGCCCGuGGCCGCGGCccguuggucgaacccCCGGCC-CCg -3'
miRNA:   3'- -UCCGGGC-CCGGUGCCGc--------------GGCUGGuGG- -5'
5630 3' -66.3 NC_001806.1 + 26421 0.78 0.076236
Target:  5'- -cGCCCGGGCCcACgGGCGCCGuCCcaACCg -3'
miRNA:   3'- ucCGGGCCCGG-UG-CCGCGGCuGG--UGG- -5'
5630 3' -66.3 NC_001806.1 + 22439 0.78 0.078152
Target:  5'- gGGGCCUGGcGCaCGCGGCgGCCGccguggccaugaGCCGCCg -3'
miRNA:   3'- -UCCGGGCC-CG-GUGCCG-CGGC------------UGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 78589 0.78 0.080114
Target:  5'- cGGCCCacGGGCCagcACGucgccGUGCCGGCCGCCg -3'
miRNA:   3'- uCCGGG--CCCGG---UGC-----CGCGGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 73455 0.79 0.064033
Target:  5'- cAGGCCgGGGUgGcCGGC-CCGGCCGCCg -3'
miRNA:   3'- -UCCGGgCCCGgU-GCCGcGGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 60017 0.8 0.059401
Target:  5'- cGGGUCCGGaGCCGCGcUGCCGuCCGCCg -3'
miRNA:   3'- -UCCGGGCC-CGGUGCcGCGGCuGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 4196 0.8 0.05793
Target:  5'- cGGCgCCGGGCCACGGCuccccGCUGACgUACCc -3'
miRNA:   3'- uCCG-GGCCCGGUGCCG-----CGGCUG-GUGG- -5'
5630 3' -66.3 NC_001806.1 + 6125 0.83 0.034086
Target:  5'- aAGGCCCGGcgcgaccgacGCCcgcagACGGCGCCGGCCACg -3'
miRNA:   3'- -UCCGGGCC----------CGG-----UGCCGCGGCUGGUGg -5'
5630 3' -66.3 NC_001806.1 + 66858 0.81 0.04737
Target:  5'- gGGGCCCGGGCaCACGGCGgUGACgcuCGCUa -3'
miRNA:   3'- -UCCGGGCCCG-GUGCCGCgGCUG---GUGG- -5'
5630 3' -66.3 NC_001806.1 + 143543 0.81 0.04737
Target:  5'- cGGCCCGgcccGGCC-CGGC-CCGGCCACCg -3'
miRNA:   3'- uCCGGGC----CCGGuGCCGcGGCUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 128566 0.81 0.04858
Target:  5'- aGGGCgCGgucguagcgggaGGUCACGGCGCCGACCACg -3'
miRNA:   3'- -UCCGgGC------------CCGGUGCCGCGGCUGGUGg -5'
5630 3' -66.3 NC_001806.1 + 4137 0.81 0.04982
Target:  5'- gAGGCCCGGGCgGCuGuCGCCcaGGCCGCCg -3'
miRNA:   3'- -UCCGGGCCCGgUGcC-GCGG--CUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 4431 0.8 0.05109
Target:  5'- uGGCCCGGGCgGgGGCGgCGuCCGCCc -3'
miRNA:   3'- uCCGGGCCCGgUgCCGCgGCuGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 151699 0.8 0.05109
Target:  5'- gGGGCCCGGGCUGCc-CGCCG-CCACCg -3'
miRNA:   3'- -UCCGGGCCCGGUGccGCGGCuGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 4750 0.8 0.055093
Target:  5'- gGGGCCCGGucGCCgGCGGCGUCGGCUGCg -3'
miRNA:   3'- -UCCGGGCC--CGG-UGCCGCGGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.