miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 3' -55.9 NC_001806.1 + 44724 0.66 0.921915
Target:  5'- uCGCGUAUcCCGGCCcCGGUugGaGGg- -3'
miRNA:   3'- -GCGUAUGaGGCCGGcGCCAugU-CUag -5'
5632 3' -55.9 NC_001806.1 + 6146 0.66 0.92136
Target:  5'- cCGCAgacgGCgCCGGCCacgaacgacgggaGCGGcUGCGGAg- -3'
miRNA:   3'- -GCGUa---UGaGGCCGG-------------CGCC-AUGUCUag -5'
5632 3' -55.9 NC_001806.1 + 137286 0.66 0.916256
Target:  5'- aCGCugGCUCCGGaaagagcaCGUGcGUGCAGAcaaUCa -3'
miRNA:   3'- -GCGuaUGAGGCCg-------GCGC-CAUGUCU---AG- -5'
5632 3' -55.9 NC_001806.1 + 108542 0.66 0.914511
Target:  5'- cCGCGUGCggCUGGCCgcgcccgccgcuccGCGGUcaaacGCGGAa- -3'
miRNA:   3'- -GCGUAUGa-GGCCGG--------------CGCCA-----UGUCUag -5'
5632 3' -55.9 NC_001806.1 + 141667 0.66 0.910358
Target:  5'- aCGCAaguccgUGCgcCUGGCCGgGGUGguGAUa -3'
miRNA:   3'- -GCGU------AUGa-GGCCGGCgCCAUguCUAg -5'
5632 3' -55.9 NC_001806.1 + 31091 0.66 0.910358
Target:  5'- gGCG-AC-CCGGCUGCGGgcCGcGGUCc -3'
miRNA:   3'- gCGUaUGaGGCCGGCGCCauGU-CUAG- -5'
5632 3' -55.9 NC_001806.1 + 40706 0.67 0.88443
Target:  5'- gCGCAgGCUgUGGCCGUGGgcgUACAcccccguaucGAUCa -3'
miRNA:   3'- -GCGUaUGAgGCCGGCGCC---AUGU----------CUAG- -5'
5632 3' -55.9 NC_001806.1 + 10117 0.67 0.87738
Target:  5'- gCGCAcgGCgcgUCGGCCGgGG-ACAGAc- -3'
miRNA:   3'- -GCGUa-UGa--GGCCGGCgCCaUGUCUag -5'
5632 3' -55.9 NC_001806.1 + 3301 0.67 0.87738
Target:  5'- gGCGUGCggCGGCgGCGGggaaGCGGGg- -3'
miRNA:   3'- gCGUAUGagGCCGgCGCCa---UGUCUag -5'
5632 3' -55.9 NC_001806.1 + 87507 0.67 0.869372
Target:  5'- aCGCGgauCUgCUGGCCGUcguagauGGUGCGGGUg -3'
miRNA:   3'- -GCGUau-GA-GGCCGGCG-------CCAUGUCUAg -5'
5632 3' -55.9 NC_001806.1 + 84885 0.67 0.862628
Target:  5'- gGCGggACUCUGGgCGUGGUGC--GUCg -3'
miRNA:   3'- gCGUa-UGAGGCCgGCGCCAUGucUAG- -5'
5632 3' -55.9 NC_001806.1 + 6082 0.67 0.854938
Target:  5'- gGCGgGC-CCgGGCgGCGGgggGCGGGUCu -3'
miRNA:   3'- gCGUaUGaGG-CCGgCGCCa--UGUCUAG- -5'
5632 3' -55.9 NC_001806.1 + 46418 0.67 0.854938
Target:  5'- gCGCGUcUUCUGcGCCGCGGU-CGGGc- -3'
miRNA:   3'- -GCGUAuGAGGC-CGGCGCCAuGUCUag -5'
5632 3' -55.9 NC_001806.1 + 136381 0.68 0.838958
Target:  5'- cCGCGgcCUCCGcGaCCGUGGccagcugGCGGGUCa -3'
miRNA:   3'- -GCGUauGAGGC-C-GGCGCCa------UGUCUAG- -5'
5632 3' -55.9 NC_001806.1 + 3090 0.68 0.838958
Target:  5'- cCGCGgcgGCggCGGCCGCGGagcucgGCAGGc- -3'
miRNA:   3'- -GCGUa--UGagGCCGGCGCCa-----UGUCUag -5'
5632 3' -55.9 NC_001806.1 + 73285 0.68 0.822226
Target:  5'- cCGCGUGCUCC-GCCGCccuGGcccGCgAGGUCg -3'
miRNA:   3'- -GCGUAUGAGGcCGGCG---CCa--UG-UCUAG- -5'
5632 3' -55.9 NC_001806.1 + 92895 0.68 0.813597
Target:  5'- uGCAgGCUgCGGCCGCguGGUccgcGCAGggCg -3'
miRNA:   3'- gCGUaUGAgGCCGGCG--CCA----UGUCuaG- -5'
5632 3' -55.9 NC_001806.1 + 70206 0.68 0.813597
Target:  5'- aGCAgcUGCUCCGGgaGCuGUACGuGAUCu -3'
miRNA:   3'- gCGU--AUGAGGCCggCGcCAUGU-CUAG- -5'
5632 3' -55.9 NC_001806.1 + 122519 0.68 0.813597
Target:  5'- aGCGUGCcguacgUCCGGCCGUGGgugGCcacGUCc -3'
miRNA:   3'- gCGUAUG------AGGCCGGCGCCa--UGuc-UAG- -5'
5632 3' -55.9 NC_001806.1 + 9858 0.68 0.812725
Target:  5'- cCGCGU--UCCGguacugcGCCGCGGUGCuGAUg -3'
miRNA:   3'- -GCGUAugAGGC-------CGGCGCCAUGuCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.