Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5636 | 5' | -58.6 | NC_001806.1 | + | 133056 | 0.66 | 0.80263 |
Target: 5'- cUGCCCUgcgCUGCggCAGCUcCU-GGGUg -3' miRNA: 3'- cACGGGG---GACGaaGUCGAaGAgCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 29871 | 0.66 | 0.80263 |
Target: 5'- -cGCCCCCc---UCGGCgcccaUCGGGCc -3' miRNA: 3'- caCGGGGGacgaAGUCGaag--AGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 123041 | 0.66 | 0.80263 |
Target: 5'- -cGCCCaCCuuaaguUGCcUCuGUUUCUCGaGGCg -3' miRNA: 3'- caCGGG-GG------ACGaAGuCGAAGAGC-CCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 144824 | 0.66 | 0.793707 |
Target: 5'- -gGCCCCCgaccgCGGCggUC-CGGGCc -3' miRNA: 3'- caCGGGGGacgaaGUCGa-AGaGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 79640 | 0.66 | 0.775437 |
Target: 5'- -cGCCUCCUcccgcGCUUCugccGCUUCUucgucCGGGUc -3' miRNA: 3'- caCGGGGGA-----CGAAGu---CGAAGA-----GCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 22076 | 0.66 | 0.756662 |
Target: 5'- -cGCCCCCggggcgggUGCUguaCGGCggCcUGGGCg -3' miRNA: 3'- caCGGGGG--------ACGAa--GUCGaaGaGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 20661 | 0.67 | 0.737453 |
Target: 5'- -gGCCCCCgGCgugcCGGCgUCg-GGGCg -3' miRNA: 3'- caCGGGGGaCGaa--GUCGaAGagCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 146654 | 0.67 | 0.737453 |
Target: 5'- -cGCCCCCUGCUcccCGGacca-CGGGUg -3' miRNA: 3'- caCGGGGGACGAa--GUCgaagaGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 20180 | 0.67 | 0.717883 |
Target: 5'- -cGCCCCCgggGC--CGGCgcggagUCGGGCa -3' miRNA: 3'- caCGGGGGa--CGaaGUCGaag---AGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 30770 | 0.67 | 0.717883 |
Target: 5'- -cGUCCuCCUccGCUUCcGCcucCUCGGGCg -3' miRNA: 3'- caCGGG-GGA--CGAAGuCGaa-GAGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 82723 | 0.67 | 0.717883 |
Target: 5'- gGUGUCCggggUCUGCggggCGGCggcgUCgUCGGGCg -3' miRNA: 3'- -CACGGG----GGACGaa--GUCGa---AG-AGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 30844 | 0.67 | 0.717883 |
Target: 5'- -gGCCCCC-GCgcu-GCUUCU-GGGCc -3' miRNA: 3'- caCGGGGGaCGaaguCGAAGAgCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 123837 | 0.68 | 0.688007 |
Target: 5'- -gGCCUCC-GCgagCGGCUUCgcgCGGGa -3' miRNA: 3'- caCGGGGGaCGaa-GUCGAAGa--GCCCg -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 5060 | 0.68 | 0.667846 |
Target: 5'- -gGCCCCCcGCUcgucgCGGuCUgggCUCGGGg -3' miRNA: 3'- caCGGGGGaCGAa----GUC-GAa--GAGCCCg -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 89081 | 0.68 | 0.63741 |
Target: 5'- cGUGCaCCCCgGCgc--GCUUCUCcggggGGGCa -3' miRNA: 3'- -CACG-GGGGaCGaaguCGAAGAG-----CCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 43200 | 0.68 | 0.63741 |
Target: 5'- -cGCCCgCgaugGCUUCu-CUUCUCGGGg -3' miRNA: 3'- caCGGGgGa---CGAAGucGAAGAGCCCg -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 98164 | 0.69 | 0.607951 |
Target: 5'- -cGCCCCCUGg-UCAGCUUUcgguacgaagaccaGGGCc -3' miRNA: 3'- caCGGGGGACgaAGUCGAAGag------------CCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 22320 | 0.7 | 0.566596 |
Target: 5'- -gGaCCaggCCUGCUUCcGgaUCUCGGGCg -3' miRNA: 3'- caC-GGg--GGACGAAGuCgaAGAGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 103125 | 0.7 | 0.566596 |
Target: 5'- -gGCCgCCUGCauggCGGCgUUCUCcaGGGCa -3' miRNA: 3'- caCGGgGGACGaa--GUCG-AAGAG--CCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 23202 | 0.7 | 0.556608 |
Target: 5'- -cGCCCCCUGCUggCGGCgg--CGGccaGCg -3' miRNA: 3'- caCGGGGGACGAa-GUCGaagaGCC---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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