miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 128544 0.66 0.741982
Target:  5'- aGCCAGACgGCgGCCCGcguCCaGGGCGCg -3'
miRNA:   3'- -UGGUCUG-CG-UGGGCug-GGcCUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 6795 0.77 0.202096
Target:  5'- gGCCAGAaccgcCGUGCaCGACCCGGAGCGuCCc -3'
miRNA:   3'- -UGGUCU-----GCGUGgGCUGGGCCUCGU-GG- -5'
5639 5' -60.8 NC_001806.1 + 137019 0.76 0.211932
Target:  5'- aGCUAGACGgacagaaACCCGGCCCGccGCACCu -3'
miRNA:   3'- -UGGUCUGCg------UGGGCUGGGCcuCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 129695 0.76 0.227457
Target:  5'- uCCGGACGCcucuCCggaGGCCCGGGGgGCCa -3'
miRNA:   3'- uGGUCUGCGu---GGg--CUGGGCCUCgUGG- -5'
5639 5' -60.8 NC_001806.1 + 26965 0.76 0.232842
Target:  5'- cGCCuGGCGCGCCgCGGCUCGuGGGC-CCg -3'
miRNA:   3'- -UGGuCUGCGUGG-GCUGGGC-CUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 114347 0.75 0.243934
Target:  5'- uGCUcGGCgGCGCCCGACgCGG-GCGCCa -3'
miRNA:   3'- -UGGuCUG-CGUGGGCUGgGCCuCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 149769 0.75 0.253704
Target:  5'- cCCAGACaugGCGCCCGGCCCcucaccucgcgcugGGGGCgGCCc -3'
miRNA:   3'- uGGUCUG---CGUGGGCUGGG--------------CCUCG-UGG- -5'
5639 5' -60.8 NC_001806.1 + 4156 0.75 0.255461
Target:  5'- cCCAGGCcgccguacaGCACCCGcCCCGGgggcgggggcccGGCGCCg -3'
miRNA:   3'- uGGUCUG---------CGUGGGCuGGGCC------------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 55721 0.75 0.261391
Target:  5'- uCCGGGCugGCGgCUGACCCGGGGgACCc -3'
miRNA:   3'- uGGUCUG--CGUgGGCUGGGCCUCgUGG- -5'
5639 5' -60.8 NC_001806.1 + 121408 0.77 0.195917
Target:  5'- aGCCGGGCGCgugcugcgccuuggGCCCGgggGCCUGGuGGCACCu -3'
miRNA:   3'- -UGGUCUGCG--------------UGGGC---UGGGCC-UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 49639 0.77 0.192658
Target:  5'- --gGGACGCguGCCgGGCCCGGAGCuCCg -3'
miRNA:   3'- uggUCUGCG--UGGgCUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 78225 0.77 0.183609
Target:  5'- gGCCGGAgGCcCuCCGACCCGGGGCcUCa -3'
miRNA:   3'- -UGGUCUgCGuG-GGCUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 71798 0.84 0.067233
Target:  5'- aACCAGuuCGCGCCCGACCUGGAGC-Cg -3'
miRNA:   3'- -UGGUCu-GCGUGGGCUGGGCCUCGuGg -5'
5639 5' -60.8 NC_001806.1 + 85491 0.81 0.109247
Target:  5'- gACCGGAUGCucACCgCGuGCCCGGGGUACCg -3'
miRNA:   3'- -UGGUCUGCG--UGG-GC-UGGGCCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 144959 0.8 0.114891
Target:  5'- gGCCcccGugGCgGCCCGGCCCGGGGCcCCg -3'
miRNA:   3'- -UGGu--CugCG-UGGGCUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 2767 0.8 0.127004
Target:  5'- gGCgCGGGCGgGCCugcgccgcggCGGCCCGGGGCGCCg -3'
miRNA:   3'- -UG-GUCUGCgUGG----------GCUGGGCCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 23364 0.78 0.154839
Target:  5'- gGCgCGGACGCcCCCGGCUCGGAcgcccGCGCCc -3'
miRNA:   3'- -UG-GUCUGCGuGGGCUGGGCCU-----CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 149239 0.78 0.154839
Target:  5'- uCCAGACGCACCgGAgUCGGGGguCCc -3'
miRNA:   3'- uGGUCUGCGUGGgCUgGGCCUCguGG- -5'
5639 5' -60.8 NC_001806.1 + 126491 0.78 0.158684
Target:  5'- cCCGGGCGCGucCCCGGCCCGGAGgAg- -3'
miRNA:   3'- uGGUCUGCGU--GGGCUGGGCCUCgUgg -5'
5639 5' -60.8 NC_001806.1 + 144993 0.78 0.174938
Target:  5'- gACCcaAGGgGC-CCCGGCCCGGGGCcCCa -3'
miRNA:   3'- -UGG--UCUgCGuGGGCUGGGCCUCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.