miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 324 0.7 0.491289
Target:  5'- cGCCGcgcgcGCGCACgCCG-CCCGGAcCGCCg -3'
miRNA:   3'- -UGGUc----UGCGUG-GGCuGGGCCUcGUGG- -5'
5639 5' -60.8 NC_001806.1 + 369 0.68 0.606089
Target:  5'- cGCgCGcGCGCGCCCGcgggggGCCCGG-GCuGCCa -3'
miRNA:   3'- -UG-GUcUGCGUGGGC------UGGGCCuCG-UGG- -5'
5639 5' -60.8 NC_001806.1 + 1412 0.66 0.741982
Target:  5'- gGCCcGugGCcgagGCCCagcgaauCCCGGgcGGCGCCg -3'
miRNA:   3'- -UGGuCugCG----UGGGcu-----GGGCC--UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 1568 0.66 0.713575
Target:  5'- gGCCGG-CGCGCaCCGcCUCGcGccccAGCGCCa -3'
miRNA:   3'- -UGGUCuGCGUG-GGCuGGGC-C----UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 1609 0.67 0.635584
Target:  5'- gGCCGcagcGGCGCGCCCaGGCCCc-AGCGCg -3'
miRNA:   3'- -UGGU----CUGCGUGGG-CUGGGccUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 1685 0.68 0.612964
Target:  5'- cGCCGGGCGcCAuggcgucgguggucCCCGaggccgccGCCCGGccguccAGCGCCg -3'
miRNA:   3'- -UGGUCUGC-GU--------------GGGC--------UGGGCC------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 1903 0.67 0.64542
Target:  5'- cCCGGGCcgaaCACgCGGCCCGaGgccAGCACCg -3'
miRNA:   3'- uGGUCUGc---GUGgGCUGGGC-C---UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 2327 0.66 0.693334
Target:  5'- gGCCAGGuCcuCGCCCGGCagCGGcgaguacAGCACCa -3'
miRNA:   3'- -UGGUCU-Gc-GUGGGCUGg-GCC-------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 2408 0.7 0.509834
Target:  5'- cGCCAugcGGCGCAgCgGGCCCGaGGCGCg -3'
miRNA:   3'- -UGGU---CUGCGUgGgCUGGGCcUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 2503 0.7 0.494973
Target:  5'- cGCCGcACGCGgCCugggcggcgggggcgGGCCCGGcGCACCg -3'
miRNA:   3'- -UGGUcUGCGUgGG---------------CUGGGCCuCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 2767 0.8 0.127004
Target:  5'- gGCgCGGGCGgGCCugcgccgcggCGGCCCGGGGCGCCg -3'
miRNA:   3'- -UG-GUCUGCgUGG----------GCUGGGCCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 3445 0.74 0.29207
Target:  5'- gGCCAGgcacucgacggccACGCGgCCGGCCUGGgcgcGGCGCCc -3'
miRNA:   3'- -UGGUC-------------UGCGUgGGCUGGGCC----UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 3613 0.67 0.635584
Target:  5'- cACC--GCGCGCUCG-CCCGGuGCGgCg -3'
miRNA:   3'- -UGGucUGCGUGGGCuGGGCCuCGUgG- -5'
5639 5' -60.8 NC_001806.1 + 4057 0.7 0.491289
Target:  5'- aGCuCGGGCGC-CCacaCGGCcgCCGGGGCGCCc -3'
miRNA:   3'- -UG-GUCUGCGuGG---GCUG--GGCCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 4122 0.67 0.674839
Target:  5'- cUCGGGCGCcCCCcagaGGCCCGG-GCGgCu -3'
miRNA:   3'- uGGUCUGCGuGGG----CUGGGCCuCGUgG- -5'
5639 5' -60.8 NC_001806.1 + 4156 0.75 0.255461
Target:  5'- cCCAGGCcgccguacaGCACCCGcCCCGGgggcgggggcccGGCGCCg -3'
miRNA:   3'- uGGUCUG---------CGUGGGCuGGGCC------------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 4253 0.69 0.564136
Target:  5'- cGCCGGAgGUcgcgucggcguccaGCUCGACCCgccGGGGCugCc -3'
miRNA:   3'- -UGGUCUgCG--------------UGGGCUGGG---CCUCGugG- -5'
5639 5' -60.8 NC_001806.1 + 4730 0.67 0.665055
Target:  5'- cCCGuuCGCGgcCCCGGgCCGGGGC-CCg -3'
miRNA:   3'- uGGUcuGCGU--GGGCUgGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 5105 0.72 0.387576
Target:  5'- gUCGGugGgGCCCGGggagCCGGGGCGCUg -3'
miRNA:   3'- uGGUCugCgUGGGCUg---GGCCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 6112 0.67 0.655245
Target:  5'- uCCGG-CGCACauaaaGGCCCGGcGCgACCg -3'
miRNA:   3'- uGGUCuGCGUGgg---CUGGGCCuCG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.