miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 152034 0.7 0.491289
Target:  5'- cGCCGcgcgcGCGCACgCCG-CCCGGAcCGCCg -3'
miRNA:   3'- -UGGUc----UGCGUG-GGCuGGGCCUcGUGG- -5'
5639 5' -60.8 NC_001806.1 + 151692 0.66 0.713575
Target:  5'- gGCCGGGgGgGCCCGggcuGCCCGccGcCACCg -3'
miRNA:   3'- -UGGUCUgCgUGGGC----UGGGCcuC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 151529 0.69 0.528665
Target:  5'- uUgGGACgGCGCCCGuggGCCCGG-GCgGCCg -3'
miRNA:   3'- uGgUCUG-CGUGGGC---UGGGCCuCG-UGG- -5'
5639 5' -60.8 NC_001806.1 + 151029 0.72 0.363981
Target:  5'- cACCAGgugGCGCACCCgGACgUGGGGCGa- -3'
miRNA:   3'- -UGGUC---UGCGUGGG-CUGgGCCUCGUgg -5'
5639 5' -60.8 NC_001806.1 + 150869 0.69 0.547748
Target:  5'- gGCCGGcuccGCGgGCCagGGCCCGG-GCACg -3'
miRNA:   3'- -UGGUC----UGCgUGGg-CUGGGCCuCGUGg -5'
5639 5' -60.8 NC_001806.1 + 150107 0.67 0.674839
Target:  5'- cGCgGGGCgGC-CCCGucCCCGGGG-ACCa -3'
miRNA:   3'- -UGgUCUG-CGuGGGCu-GGGCCUCgUGG- -5'
5639 5' -60.8 NC_001806.1 + 149769 0.75 0.253704
Target:  5'- cCCAGACaugGCGCCCGGCCCcucaccucgcgcugGGGGCgGCCc -3'
miRNA:   3'- uGGUCUG---CGUGGGCUGGG--------------CCUCG-UGG- -5'
5639 5' -60.8 NC_001806.1 + 149239 0.78 0.154839
Target:  5'- uCCAGACGCACCgGAgUCGGGGguCCc -3'
miRNA:   3'- uGGUCUGCGUGGgCUgGGCCUCguGG- -5'
5639 5' -60.8 NC_001806.1 + 147986 0.7 0.500524
Target:  5'- gGCCAGACGC-CC---CCCGcGGCGCCg -3'
miRNA:   3'- -UGGUCUGCGuGGgcuGGGCcUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 147771 0.68 0.612964
Target:  5'- gGCCgcGGACGCgggggGCCCGgggcggggggcggaGCCUGGcaugGGCGCCg -3'
miRNA:   3'- -UGG--UCUGCG-----UGGGC--------------UGGGCC----UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 147670 0.68 0.586505
Target:  5'- gGCCGGcucCGC-CCCGGgggCCGGGGCGCg -3'
miRNA:   3'- -UGGUCu--GCGuGGGCUg--GGCCUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 147426 0.66 0.741982
Target:  5'- gGCCcGAccCGCGCCUcuuCCuCGGAcGCACCg -3'
miRNA:   3'- -UGGuCU--GCGUGGGcu-GG-GCCU-CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 146853 0.66 0.694303
Target:  5'- aGCCGGGgacCGCgGCCCGcAgCCGGGuCGCCa -3'
miRNA:   3'- -UGGUCU---GCG-UGGGC-UgGGCCUcGUGG- -5'
5639 5' -60.8 NC_001806.1 + 144993 0.78 0.174938
Target:  5'- gACCcaAGGgGC-CCCGGCCCGGGGCcCCa -3'
miRNA:   3'- -UGG--UCUgCGuGGGCUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 144959 0.8 0.114891
Target:  5'- gGCCcccGugGCgGCCCGGCCCGGGGCcCCg -3'
miRNA:   3'- -UGGu--CugCG-UGGGCUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 144892 0.73 0.326917
Target:  5'- cCCGGAgGCuuuuccggguuCCCGGCCCGGGGC-CUg -3'
miRNA:   3'- uGGUCUgCGu----------GGGCUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 144817 0.66 0.732591
Target:  5'- gACgAGGgGCcCCCGACCgCGGcGguCCg -3'
miRNA:   3'- -UGgUCUgCGuGGGCUGG-GCCuCguGG- -5'
5639 5' -60.8 NC_001806.1 + 143634 0.71 0.455183
Target:  5'- uCCAG-CGC-CCCG-UCCGGcGCGCCg -3'
miRNA:   3'- uGGUCuGCGuGGGCuGGGCCuCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 143539 0.69 0.519216
Target:  5'- gGCCcGGCccgGCCCGGCCCGGcccGGcCACCg -3'
miRNA:   3'- -UGGuCUGcg-UGGGCUGGGCC---UC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 143408 0.66 0.739173
Target:  5'- gGCCGGGuCGCggcucuuacgagcgGCCCGGCCCGcGcuccCACCc -3'
miRNA:   3'- -UGGUCU-GCG--------------UGGGCUGGGC-Cuc--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.