miRNA display CGI


Results 1 - 20 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 100875 0.66 0.703967
Target:  5'- uGCCgAGGCGcCGCCCGAUCgCGcacAGCGCg -3'
miRNA:   3'- -UGG-UCUGC-GUGGGCUGG-GCc--UCGUGg -5'
5639 5' -60.8 NC_001806.1 + 114008 0.66 0.703967
Target:  5'- gACCGGcCGCACCgGGgggcggaCUGGAccguGCACCa -3'
miRNA:   3'- -UGGUCuGCGUGGgCUg------GGCCU----CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 146853 0.66 0.694303
Target:  5'- aGCCGGGgacCGCgGCCCGcAgCCGGGuCGCCa -3'
miRNA:   3'- -UGGUCU---GCG-UGGGC-UgGGCCUcGUGG- -5'
5639 5' -60.8 NC_001806.1 + 24452 0.66 0.694303
Target:  5'- cGCguGcgcACGCGCuUCGGCCCGGAcaCGCCg -3'
miRNA:   3'- -UGguC---UGCGUG-GGCUGGGCCUc-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 86012 0.66 0.713575
Target:  5'- cCCGGGgGCGCuuGGCCgGGgagGGCaggGCCg -3'
miRNA:   3'- uGGUCUgCGUGggCUGGgCC---UCG---UGG- -5'
5639 5' -60.8 NC_001806.1 + 29847 0.66 0.713575
Target:  5'- cCCAGcCG-GCCgCGGCUCGGAcaGCGCCc -3'
miRNA:   3'- uGGUCuGCgUGG-GCUGGGCCU--CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 128544 0.66 0.741982
Target:  5'- aGCCAGACgGCgGCCCGcguCCaGGGCGCg -3'
miRNA:   3'- -UGGUCUG-CG-UGGGCug-GGcCUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 113392 0.66 0.703967
Target:  5'- uCCGGGa-CGCCCGggGCCUGGAGCugggggugggacGCCa -3'
miRNA:   3'- uGGUCUgcGUGGGC--UGGGCCUCG------------UGG- -5'
5639 5' -60.8 NC_001806.1 + 151692 0.66 0.713575
Target:  5'- gGCCGGGgGgGCCCGggcuGCCCGccGcCACCg -3'
miRNA:   3'- -UGGUCUgCgUGGGC----UGGGCcuC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 76793 0.66 0.694303
Target:  5'- uACCuuugAGACGCACCCGcuaaGCgCGGccAGCGgCg -3'
miRNA:   3'- -UGG----UCUGCGUGGGC----UGgGCC--UCGUgG- -5'
5639 5' -60.8 NC_001806.1 + 46283 0.66 0.694303
Target:  5'- cCCAGACGCcCCCGcgUCGacGGCGCCa -3'
miRNA:   3'- uGGUCUGCGuGGGCugGGCc-UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 30600 0.66 0.710699
Target:  5'- gGCCAagagggcggcGACGCACCCccccuccgacucagGGCCgGGGGgGCg -3'
miRNA:   3'- -UGGU----------CUGCGUGGG--------------CUGGgCCUCgUGg -5'
5639 5' -60.8 NC_001806.1 + 30885 0.66 0.713575
Target:  5'- uGCCcggaAGACGCGCCacgcggaGACuuCCGGGGCcguCCc -3'
miRNA:   3'- -UGG----UCUGCGUGGg------CUG--GGCCUCGu--GG- -5'
5639 5' -60.8 NC_001806.1 + 83874 0.66 0.694303
Target:  5'- aACUGGAaggauUGCGCCCGucuCCUGGAcuGCACg -3'
miRNA:   3'- -UGGUCU-----GCGUGGGCu--GGGCCU--CGUGg -5'
5639 5' -60.8 NC_001806.1 + 100065 0.66 0.713575
Target:  5'- uACCGgcGACGCuuuCCCGAccCCCGGAcC-CCa -3'
miRNA:   3'- -UGGU--CUGCGu--GGGCU--GGGCCUcGuGG- -5'
5639 5' -60.8 NC_001806.1 + 2327 0.66 0.693334
Target:  5'- gGCCAGGuCcuCGCCCGGCagCGGcgaguacAGCACCa -3'
miRNA:   3'- -UGGUCU-Gc-GUGGGCUGg-GCC-------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 101001 0.66 0.713575
Target:  5'- -aCAGGCGCuccuCCCGggagagcggcgGCCCGcGGCGCUc -3'
miRNA:   3'- ugGUCUGCGu---GGGC-----------UGGGCcUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 70497 0.66 0.694303
Target:  5'- --gGGACaCGCCCGaccGCCUGGGGC-CCu -3'
miRNA:   3'- uggUCUGcGUGGGC---UGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 66994 0.66 0.703967
Target:  5'- uCCAGGCGCGCCCccACCCGc-GUcCCg -3'
miRNA:   3'- uGGUCUGCGUGGGc-UGGGCcuCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 98122 0.66 0.694303
Target:  5'- aACUcGAUGCGCaucagcucgCGGCCCGGGGCcugcuacaGCCg -3'
miRNA:   3'- -UGGuCUGCGUGg--------GCUGGGCCUCG--------UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.