Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5639 | 5' | -60.8 | NC_001806.1 | + | 1568 | 0.66 | 0.713575 |
Target: 5'- gGCCGG-CGCGCaCCGcCUCGcGccccAGCGCCa -3' miRNA: 3'- -UGGUCuGCGUG-GGCuGGGC-C----UCGUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 30600 | 0.66 | 0.710699 |
Target: 5'- gGCCAagagggcggcGACGCACCCccccuccgacucagGGCCgGGGGgGCg -3' miRNA: 3'- -UGGU----------CUGCGUGGG--------------CUGGgCCUCgUGg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 36743 | 0.66 | 0.723119 |
Target: 5'- --gGGAUGCGCCCGGgCgGGaAGCuCCu -3' miRNA: 3'- uggUCUGCGUGGGCUgGgCC-UCGuGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 88387 | 0.66 | 0.732591 |
Target: 5'- gGCUAG-CGUguuguUCCGGCCCGGuuugagacGGUACCa -3' miRNA: 3'- -UGGUCuGCGu----GGGCUGGGCC--------UCGUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 78687 | 0.66 | 0.713575 |
Target: 5'- cCUGGGCGCGCCCGuCgUCGuGGCGCUc -3' miRNA: 3'- uGGUCUGCGUGGGCuG-GGCcUCGUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 132952 | 0.66 | 0.723119 |
Target: 5'- gGCCGGACGgGCCUaGCaagaCUGGAcGCGCUg -3' miRNA: 3'- -UGGUCUGCgUGGGcUG----GGCCU-CGUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 29847 | 0.66 | 0.713575 |
Target: 5'- cCCAGcCG-GCCgCGGCUCGGAcaGCGCCc -3' miRNA: 3'- uGGUCuGCgUGG-GCUGGGCCU--CGUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 23858 | 0.66 | 0.722168 |
Target: 5'- gGCCuGGAUGCGccagaucCCCGACCCcGAGgACg -3' miRNA: 3'- -UGG-UCUGCGU-------GGGCUGGGcCUCgUGg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 30885 | 0.66 | 0.713575 |
Target: 5'- uGCCcggaAGACGCGCCacgcggaGACuuCCGGGGCcguCCc -3' miRNA: 3'- -UGG----UCUGCGUGGg------CUG--GGCCUCGu--GG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 10861 | 0.66 | 0.732591 |
Target: 5'- gUCGGGcCGCGCCCcguaGGCCCcGGAGCu-- -3' miRNA: 3'- uGGUCU-GCGUGGG----CUGGG-CCUCGugg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 100875 | 0.66 | 0.703967 |
Target: 5'- uGCCgAGGCGcCGCCCGAUCgCGcacAGCGCg -3' miRNA: 3'- -UGG-UCUGC-GUGGGCUGG-GCc--UCGUGg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 21070 | 0.66 | 0.723119 |
Target: 5'- cGCCGu-CGCAgCCGuaucCCCGGAGgAUCg -3' miRNA: 3'- -UGGUcuGCGUgGGCu---GGGCCUCgUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 2327 | 0.66 | 0.693334 |
Target: 5'- gGCCAGGuCcuCGCCCGGCagCGGcgaguacAGCACCa -3' miRNA: 3'- -UGGUCU-Gc-GUGGGCUGg-GCC-------UCGUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 98122 | 0.66 | 0.694303 |
Target: 5'- aACUcGAUGCGCaucagcucgCGGCCCGGGGCcugcuacaGCCg -3' miRNA: 3'- -UGGuCUGCGUGg--------GCUGGGCCUCG--------UGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 56159 | 0.66 | 0.723119 |
Target: 5'- cGCCcGAcCGCccGCCCGuugacCCCGGAGgGCa -3' miRNA: 3'- -UGGuCU-GCG--UGGGCu----GGGCCUCgUGg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 128544 | 0.66 | 0.741982 |
Target: 5'- aGCCAGACgGCgGCCCGcguCCaGGGCGCg -3' miRNA: 3'- -UGGUCUG-CG-UGGGCug-GGcCUCGUGg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 57964 | 0.66 | 0.723119 |
Target: 5'- gGCCcc-CGCcucuCCCG-CCCGGgcAGCGCCa -3' miRNA: 3'- -UGGucuGCGu---GGGCuGGGCC--UCGUGG- -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 123299 | 0.66 | 0.732591 |
Target: 5'- gACCAGACccuGCAgCUGcACCgGGAGgGCg -3' miRNA: 3'- -UGGUCUG---CGUgGGC-UGGgCCUCgUGg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 70972 | 0.66 | 0.723119 |
Target: 5'- gACCAG-CGCGCCgCGGCCauccgagaGGuaauGGCGCa -3' miRNA: 3'- -UGGUCuGCGUGG-GCUGGg-------CC----UCGUGg -5' |
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5639 | 5' | -60.8 | NC_001806.1 | + | 100784 | 0.66 | 0.723119 |
Target: 5'- gGCCAGucgcCGCGCCC--CUCGcGAGaCGCCg -3' miRNA: 3'- -UGGUCu---GCGUGGGcuGGGC-CUC-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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