miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 55721 0.75 0.261391
Target:  5'- uCCGGGCugGCGgCUGACCCGGGGgACCc -3'
miRNA:   3'- uGGUCUG--CGUgGGCUGGGCCUCgUGG- -5'
5639 5' -60.8 NC_001806.1 + 77507 0.75 0.266822
Target:  5'- gGCgAGGCGUACCUgcgagugagcggaGGCCCGGGGCcCCu -3'
miRNA:   3'- -UGgUCUGCGUGGG-------------CUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 45017 0.74 0.279219
Target:  5'- --gAGACGCGCCCGACggcccauCCGGAGUcCCc -3'
miRNA:   3'- uggUCUGCGUGGGCUG-------GGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 3445 0.74 0.29207
Target:  5'- gGCCAGgcacucgacggccACGCGgCCGGCCUGGgcgcGGCGCCc -3'
miRNA:   3'- -UGGUC-------------UGCGUgGGCUGGGCC----UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 133490 0.74 0.292725
Target:  5'- uGCCggaggaGGACGCACUcaCGGCCCGGGGCcuuauggaggacGCCu -3'
miRNA:   3'- -UGG------UCUGCGUGG--GCUGGGCCUCG------------UGG- -5'
5639 5' -60.8 NC_001806.1 + 50257 0.74 0.306056
Target:  5'- gGCCGcauGACGUACCUGGCcaCCGGGGC-CCu -3'
miRNA:   3'- -UGGU---CUGCGUGGGCUG--GGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 36344 0.74 0.312895
Target:  5'- cGCCgaGGACGCGCCgGACCCaGAGaCGuCCu -3'
miRNA:   3'- -UGG--UCUGCGUGGgCUGGGcCUC-GU-GG- -5'
5639 5' -60.8 NC_001806.1 + 103928 0.74 0.312895
Target:  5'- aGCCGGgucACGCGgCUGACgCGGAGCGuCCg -3'
miRNA:   3'- -UGGUC---UGCGUgGGCUGgGCCUCGU-GG- -5'
5639 5' -60.8 NC_001806.1 + 96375 0.73 0.319848
Target:  5'- cGCCAgGGCGCcCCCG-CgCgGGGGCGCCg -3'
miRNA:   3'- -UGGU-CUGCGuGGGCuG-GgCCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 144892 0.73 0.326917
Target:  5'- cCCGGAgGCuuuuccggguuCCCGGCCCGGGGC-CUg -3'
miRNA:   3'- uGGUCUgCGu----------GGGCUGGGCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 35553 0.73 0.329777
Target:  5'- aGCCGcucGGCGCGCCCGGCgCCGcGccgaacgacgugcgcAGCGCCg -3'
miRNA:   3'- -UGGU---CUGCGUGGGCUG-GGC-C---------------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 39667 0.73 0.334101
Target:  5'- cACCAGACGCACCCGugU----GUACCa -3'
miRNA:   3'- -UGGUCUGCGUGGGCugGgccuCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 131947 0.73 0.337006
Target:  5'- -gCGGGCGCugUacgcgugcguccuggCGGCCCuGGAGCGCCa -3'
miRNA:   3'- ugGUCUGCGugG---------------GCUGGG-CCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 134849 0.73 0.3414
Target:  5'- gACCuGGCGCACCUcgcaGGCCaggCGGAGCAgCg -3'
miRNA:   3'- -UGGuCUGCGUGGG----CUGG---GCCUCGUgG- -5'
5639 5' -60.8 NC_001806.1 + 88996 0.73 0.348813
Target:  5'- gGCCAGAagcCGCccgACCCGACgCGGAGgACg -3'
miRNA:   3'- -UGGUCU---GCG---UGGGCUGgGCCUCgUGg -5'
5639 5' -60.8 NC_001806.1 + 47709 0.73 0.35181
Target:  5'- cGCCAGGCGCACaugcgcggacgcgauCgCGACCUGGGagaaaugcugcGCGCCa -3'
miRNA:   3'- -UGGUCUGCGUG---------------G-GCUGGGCCU-----------CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 151029 0.72 0.363981
Target:  5'- cACCAGgugGCGCACCCgGACgUGGGGCGa- -3'
miRNA:   3'- -UGGUC---UGCGUGGG-CUGgGCCUCGUgg -5'
5639 5' -60.8 NC_001806.1 + 28517 0.72 0.363981
Target:  5'- cUCAGACGCAg--GGCCCGGGGuCGCCg -3'
miRNA:   3'- uGGUCUGCGUgggCUGGGCCUC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 21506 0.72 0.363981
Target:  5'- gACCGGGC---CCCGGCCCGGGGcCGCg -3'
miRNA:   3'- -UGGUCUGcguGGGCUGGGCCUC-GUGg -5'
5639 5' -60.8 NC_001806.1 + 52751 0.72 0.371735
Target:  5'- uCCGGAUGCGaaCGACCCGGu-CGCCg -3'
miRNA:   3'- uGGUCUGCGUggGCUGGGCCucGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.