miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 22867 0.66 0.732591
Target:  5'- gACCuGGCGg--CCGuCCCGGGGCugGCCg -3'
miRNA:   3'- -UGGuCUGCgugGGCuGGGCCUCG--UGG- -5'
5639 5' -60.8 NC_001806.1 + 43381 0.66 0.731647
Target:  5'- cCUGGACGaCACCCGACgCCucgugaaGGcccGCGCCu -3'
miRNA:   3'- uGGUCUGC-GUGGGCUG-GG-------CCu--CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 61819 0.66 0.726917
Target:  5'- uACCGGccACGUACUCGcggcgcGCCUGGucguuguuguggaaaAGCACCa -3'
miRNA:   3'- -UGGUC--UGCGUGGGC------UGGGCC---------------UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 63724 0.66 0.723119
Target:  5'- cGCCGG-CGaggACCCccuucAUCCGGAGCACg -3'
miRNA:   3'- -UGGUCuGCg--UGGGc----UGGGCCUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 100784 0.66 0.723119
Target:  5'- gGCCAGucgcCGCGCCC--CUCGcGAGaCGCCg -3'
miRNA:   3'- -UGGUCu---GCGUGGGcuGGGC-CUC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 119258 0.66 0.723119
Target:  5'- uCCccGCGUccgcagcccuugGCCCGGCCCcacgcgGGGGCGCCc -3'
miRNA:   3'- uGGucUGCG------------UGGGCUGGG------CCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 56159 0.66 0.723119
Target:  5'- cGCCcGAcCGCccGCCCGuugacCCCGGAGgGCa -3'
miRNA:   3'- -UGGuCU-GCG--UGGGCu----GGGCCUCgUGg -5'
5639 5' -60.8 NC_001806.1 + 21070 0.66 0.723119
Target:  5'- cGCCGu-CGCAgCCGuaucCCCGGAGgAUCg -3'
miRNA:   3'- -UGGUcuGCGUgGGCu---GGGCCUCgUGG- -5'
5639 5' -60.8 NC_001806.1 + 47188 0.66 0.723119
Target:  5'- cGCCAc-CGCccccccGCCCGGCCgGGGGUcCCa -3'
miRNA:   3'- -UGGUcuGCG------UGGGCUGGgCCUCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 132952 0.66 0.723119
Target:  5'- gGCCGGACGgGCCUaGCaagaCUGGAcGCGCUg -3'
miRNA:   3'- -UGGUCUGCgUGGGcUG----GGCCU-CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 57964 0.66 0.723119
Target:  5'- gGCCcc-CGCcucuCCCG-CCCGGgcAGCGCCa -3'
miRNA:   3'- -UGGucuGCGu---GGGCuGGGCC--UCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 36743 0.66 0.723119
Target:  5'- --gGGAUGCGCCCGGgCgGGaAGCuCCu -3'
miRNA:   3'- uggUCUGCGUGGGCUgGgCC-UCGuGG- -5'
5639 5' -60.8 NC_001806.1 + 70972 0.66 0.723119
Target:  5'- gACCAG-CGCGCCgCGGCCauccgagaGGuaauGGCGCa -3'
miRNA:   3'- -UGGUCuGCGUGG-GCUGGg-------CC----UCGUGg -5'
5639 5' -60.8 NC_001806.1 + 23858 0.66 0.722168
Target:  5'- gGCCuGGAUGCGccagaucCCCGACCCcGAGgACg -3'
miRNA:   3'- -UGG-UCUGCGU-------GGGCUGGGcCUCgUGg -5'
5639 5' -60.8 NC_001806.1 + 151692 0.66 0.713575
Target:  5'- gGCCGGGgGgGCCCGggcuGCCCGccGcCACCg -3'
miRNA:   3'- -UGGUCUgCgUGGGC----UGGGCcuC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 101001 0.66 0.713575
Target:  5'- -aCAGGCGCuccuCCCGggagagcggcgGCCCGcGGCGCUc -3'
miRNA:   3'- ugGUCUGCGu---GGGC-----------UGGGCcUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 78687 0.66 0.713575
Target:  5'- cCUGGGCGCGCCCGuCgUCGuGGCGCUc -3'
miRNA:   3'- uGGUCUGCGUGGGCuG-GGCcUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 86012 0.66 0.713575
Target:  5'- cCCGGGgGCGCuuGGCCgGGgagGGCaggGCCg -3'
miRNA:   3'- uGGUCUgCGUGggCUGGgCC---UCG---UGG- -5'
5639 5' -60.8 NC_001806.1 + 29847 0.66 0.713575
Target:  5'- cCCAGcCG-GCCgCGGCUCGGAcaGCGCCc -3'
miRNA:   3'- uGGUCuGCgUGG-GCUGGGCCU--CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 100065 0.66 0.713575
Target:  5'- uACCGgcGACGCuuuCCCGAccCCCGGAcC-CCa -3'
miRNA:   3'- -UGGU--CUGCGu--GGGCU--GGGCCUcGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.