miRNA display CGI


Results 21 - 40 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5639 5' -60.8 NC_001806.1 + 6242 0.68 0.576755
Target:  5'- cAUCGcGACGC-CCCGGCUCGGGaucgggaucGCAUCg -3'
miRNA:   3'- -UGGU-CUGCGuGGGCUGGGCCU---------CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 6795 0.77 0.202096
Target:  5'- gGCCAGAaccgcCGUGCaCGACCCGGAGCGuCCc -3'
miRNA:   3'- -UGGUCU-----GCGUGgGCUGGGCCUCGU-GG- -5'
5639 5' -60.8 NC_001806.1 + 9008 0.67 0.684591
Target:  5'- gGCUAGGCGgACcaCCGGCCCuuuauGCGCCu -3'
miRNA:   3'- -UGGUCUGCgUG--GGCUGGGccu--CGUGG- -5'
5639 5' -60.8 NC_001806.1 + 9089 0.7 0.509834
Target:  5'- gGCCGGAa--GCCC--CCCGGAGcCACCg -3'
miRNA:   3'- -UGGUCUgcgUGGGcuGGGCCUC-GUGG- -5'
5639 5' -60.8 NC_001806.1 + 10411 0.67 0.674839
Target:  5'- aGCCGGGgGguCCCGcuGgCgGGAGUGCCg -3'
miRNA:   3'- -UGGUCUgCguGGGC--UgGgCCUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 10861 0.66 0.732591
Target:  5'- gUCGGGcCGCGCCCcguaGGCCCcGGAGCu-- -3'
miRNA:   3'- uGGUCU-GCGUGGG----CUGGG-CCUCGugg -5'
5639 5' -60.8 NC_001806.1 + 12184 0.66 0.732591
Target:  5'- cACCGuGACGaCAUgcaCGACCCGuGGGCAUUu -3'
miRNA:   3'- -UGGU-CUGC-GUGg--GCUGGGC-CUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 12405 0.7 0.500524
Target:  5'- gGCUGGugGCacagACCCagaGGCCCacGAGCACCa -3'
miRNA:   3'- -UGGUCugCG----UGGG---CUGGGc-CUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 17380 0.71 0.42056
Target:  5'- uCCGucGACGCaaGCCCGGCCCuguGGAGCuuCCu -3'
miRNA:   3'- uGGU--CUGCG--UGGGCUGGG---CCUCGu-GG- -5'
5639 5' -60.8 NC_001806.1 + 18448 0.67 0.655245
Target:  5'- aAUCGGAUGgGCCCGGgcguuCCaCGGAGCugguaucgGCCa -3'
miRNA:   3'- -UGGUCUGCgUGGGCU-----GG-GCCUCG--------UGG- -5'
5639 5' -60.8 NC_001806.1 + 18555 0.68 0.596285
Target:  5'- uCCAGACGCACagcgaggGACCCGcGGGguUCu -3'
miRNA:   3'- uGGUCUGCGUGgg-----CUGGGC-CUCguGG- -5'
5639 5' -60.8 NC_001806.1 + 20791 0.72 0.403031
Target:  5'- aGCCcgaGGACGC-CCCGAUCguccacaCGGAGCGCg -3'
miRNA:   3'- -UGG---UCUGCGuGGGCUGG-------GCCUCGUGg -5'
5639 5' -60.8 NC_001806.1 + 21070 0.66 0.723119
Target:  5'- cGCCGu-CGCAgCCGuaucCCCGGAGgAUCg -3'
miRNA:   3'- -UGGUcuGCGUgGGCu---GGGCCUCgUGG- -5'
5639 5' -60.8 NC_001806.1 + 21272 0.68 0.590414
Target:  5'- gACCucGACGaCGCCCGGcgggacgggagggccCCCGcggcGGGCACCg -3'
miRNA:   3'- -UGGu-CUGC-GUGGGCU---------------GGGC----CUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 21396 0.67 0.6346
Target:  5'- uCCGGACGaucccgaCGCCCGAcCCCGcGGCcucGCCg -3'
miRNA:   3'- uGGUCUGC-------GUGGGCU-GGGCcUCG---UGG- -5'
5639 5' -60.8 NC_001806.1 + 21506 0.72 0.363981
Target:  5'- gACCGGGC---CCCGGCCCGGGGcCGCg -3'
miRNA:   3'- -UGGUCUGcguGGGCUGGGCCUC-GUGg -5'
5639 5' -60.8 NC_001806.1 + 21811 0.69 0.528665
Target:  5'- -gCGGACGcCGCCCccGCCCGGGcCACCc -3'
miRNA:   3'- ugGUCUGC-GUGGGc-UGGGCCUcGUGG- -5'
5639 5' -60.8 NC_001806.1 + 21986 0.68 0.596285
Target:  5'- aGCUGGACGCcgACgCGACCUccGGCGCCu -3'
miRNA:   3'- -UGGUCUGCG--UGgGCUGGGccUCGUGG- -5'
5639 5' -60.8 NC_001806.1 + 22065 0.67 0.655245
Target:  5'- cGCCGGGC-C-CCCGccCCCGGGGCGg- -3'
miRNA:   3'- -UGGUCUGcGuGGGCu-GGGCCUCGUgg -5'
5639 5' -60.8 NC_001806.1 + 22102 0.68 0.615912
Target:  5'- gGCCuGGGCGacagcCGCCCgGGCCUcuggGGGGCGCCc -3'
miRNA:   3'- -UGG-UCUGC-----GUGGG-CUGGG----CCUCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.