miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5640 3' -55.1 NC_001806.1 + 95377 0.66 0.922911
Target:  5'- gGGcACGgGGguugGGAGCucccgGGGGCGGGG-GCg -3'
miRNA:   3'- -UC-UGCgCCa---UUUUG-----UCUCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 65269 0.66 0.922359
Target:  5'- cAGcCGCcacccagGGUGAAGCGGGGaggaggaGGGGgGCc -3'
miRNA:   3'- -UCuGCG-------CCAUUUUGUCUCg------CCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 140885 0.66 0.917274
Target:  5'- aGGGCccguCGGU---ACAGGGCGGGccgucauccGCGCg -3'
miRNA:   3'- -UCUGc---GCCAuuuUGUCUCGCCC---------CGCG- -5'
5640 3' -55.1 NC_001806.1 + 15747 0.66 0.928308
Target:  5'- gGGA-GCGGUAGcGCGaGGUGaGGCGCg -3'
miRNA:   3'- -UCUgCGCCAUUuUGUcUCGCcCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 5937 0.66 0.917274
Target:  5'- cGGCG-GGcGGGACcgccccaagGGGGCGGGGcCGCc -3'
miRNA:   3'- uCUGCgCCaUUUUG---------UCUCGCCCC-GCG- -5'
5640 3' -55.1 NC_001806.1 + 132150 0.66 0.922911
Target:  5'- cGGCGCGcGUugccGAGcaucccgacgcGCGGcuGGCGuGGGCGCg -3'
miRNA:   3'- uCUGCGC-CA----UUU-----------UGUC--UCGC-CCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 131448 0.66 0.917274
Target:  5'- cGGuACGUGGUcguccGCGGAcCGGcGGCGCu -3'
miRNA:   3'- -UC-UGCGCCAuuu--UGUCUcGCC-CCGCG- -5'
5640 3' -55.1 NC_001806.1 + 62306 0.66 0.922359
Target:  5'- cAGugGCGGcGGGccuggcGCGGAGgGGGuuugucggucacaGCGCg -3'
miRNA:   3'- -UCugCGCCaUUU------UGUCUCgCCC-------------CGCG- -5'
5640 3' -55.1 NC_001806.1 + 95938 0.66 0.922911
Target:  5'- -cGCcCGGUucaucAugGGGGCGGGGgGCu -3'
miRNA:   3'- ucUGcGCCAuu---UugUCUCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 25962 0.66 0.928308
Target:  5'- gGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 143791 0.66 0.917274
Target:  5'- cGACGgGGggacggagGGGACGGAGgGaGGGgGUg -3'
miRNA:   3'- uCUGCgCCa-------UUUUGUCUCgC-CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 133196 0.66 0.922911
Target:  5'- aAGACGCGGau--GCGGcuucCGGGGUGa -3'
miRNA:   3'- -UCUGCGCCauuuUGUCuc--GCCCCGCg -5'
5640 3' -55.1 NC_001806.1 + 4828 0.66 0.928308
Target:  5'- cGGgGCGGcGAGgccGCGGGGUcGGGCGUc -3'
miRNA:   3'- uCUgCGCCaUUU---UGUCUCGcCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 29682 0.66 0.928308
Target:  5'- cGGGCGaggaaaGGgcGGGCcggGGAG-GGGGCGUa -3'
miRNA:   3'- -UCUGCg-----CCauUUUG---UCUCgCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 78319 0.66 0.943054
Target:  5'- uGGCGCucGGUccccgagcugGGAACcGAGCGcGGCGCc -3'
miRNA:   3'- uCUGCG--CCA----------UUUUGuCUCGCcCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 394 0.66 0.917274
Target:  5'- cGGGCuGCcacaGGUGAaaccAACAGAGCacGGCGCa -3'
miRNA:   3'- -UCUG-CG----CCAUU----UUGUCUCGccCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 30407 0.66 0.922911
Target:  5'- -cGCGCGGcucGGgGGGGCcGGGCGUg -3'
miRNA:   3'- ucUGCGCCauuUUgUCUCGcCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 83804 0.66 0.917274
Target:  5'- --cCGgGGgcgAGGAgGGGGCGGGGUcgGCg -3'
miRNA:   3'- ucuGCgCCa--UUUUgUCUCGCCCCG--CG- -5'
5640 3' -55.1 NC_001806.1 + 44935 0.66 0.917274
Target:  5'- -uACGUGGUGcc-CGGGGCuggcuagcgcgGGGGCGUg -3'
miRNA:   3'- ucUGCGCCAUuuuGUCUCG-----------CCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 19108 0.66 0.922911
Target:  5'- cGACGgGGUG----GGGGCccGGGGCuGCg -3'
miRNA:   3'- uCUGCgCCAUuuugUCUCG--CCCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.