miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5640 3' -55.1 NC_001806.1 + 78319 0.66 0.943054
Target:  5'- uGGCGCucGGUccccgagcugGGAACcGAGCGcGGCGCc -3'
miRNA:   3'- uCUGCG--CCA----------UUUUGuCUCGCcCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 6469 0.77 0.387774
Target:  5'- gGGACGCGGgggcggaGGAGgGGGGaCGCg -3'
miRNA:   3'- -UCUGCGCCauuuug-UCUCgCCCC-GCG- -5'
5640 3' -55.1 NC_001806.1 + 6513 0.77 0.387774
Target:  5'- gGGACGCGGgggcggaGGAGgGGGGaCGCg -3'
miRNA:   3'- -UCUGCGCCauuuug-UCUCgCCCC-GCG- -5'
5640 3' -55.1 NC_001806.1 + 32006 0.77 0.397925
Target:  5'- cAGACGUGGgUGuuGgGGGGUGGGGCGg -3'
miRNA:   3'- -UCUGCGCC-AUuuUgUCUCGCCCCGCg -5'
5640 3' -55.1 NC_001806.1 + 93713 0.77 0.397925
Target:  5'- gGGGgGUGGggGAACcuAGGGCGGGGCGg -3'
miRNA:   3'- -UCUgCGCCauUUUG--UCUCGCCCCGCg -5'
5640 3' -55.1 NC_001806.1 + 134818 0.77 0.406514
Target:  5'- uGGugGCGGUAAAccGCGGcuGGCGGucgccgaccuGGCGCa -3'
miRNA:   3'- -UCugCGCCAUUU--UGUC--UCGCC----------CCGCG- -5'
5640 3' -55.1 NC_001806.1 + 90660 0.76 0.415218
Target:  5'- cGGACaaGGUAAccauaGGCGGGGCGGaGGUGCa -3'
miRNA:   3'- -UCUGcgCCAUU-----UUGUCUCGCC-CCGCG- -5'
5640 3' -55.1 NC_001806.1 + 5092 0.76 0.442001
Target:  5'- uGGGCGgcggcccguCGGUGGGGCccggGGAGcCGGGGCGCu -3'
miRNA:   3'- -UCUGC---------GCCAUUUUG----UCUC-GCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 21213 0.76 0.442001
Target:  5'- gGGGCGCGGagacGGAGgAGGGCGGGGaCGa -3'
miRNA:   3'- -UCUGCGCCa---UUUUgUCUCGCCCC-GCg -5'
5640 3' -55.1 NC_001806.1 + 6425 0.77 0.387774
Target:  5'- gGGACGCGGggguggaGGAGgGGGGaCGCg -3'
miRNA:   3'- -UCUGCGCCauuuug-UCUCgCCCC-GCG- -5'
5640 3' -55.1 NC_001806.1 + 31959 0.77 0.37287
Target:  5'- gGGugGCGGg---GCGGGaCGGGGCGCc -3'
miRNA:   3'- -UCugCGCCauuuUGUCUcGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 42302 0.78 0.36476
Target:  5'- gGGACGCagcgcugacGGUGu--CGGGGCGGGGgGCg -3'
miRNA:   3'- -UCUGCG---------CCAUuuuGUCUCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 24989 0.9 0.060409
Target:  5'- gGGACGgGGUGcuguaacgggccgGGACGGGGCGGGGCGCu -3'
miRNA:   3'- -UCUGCgCCAU-------------UUUGUCUCGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 2848 0.85 0.137999
Target:  5'- gGGGCGCGGgcGcGgGGAGgGGGGCGCg -3'
miRNA:   3'- -UCUGCGCCauUuUgUCUCgCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 20537 0.85 0.137999
Target:  5'- cGGAUcggGCGGUAAugagaugccauGCGGGGCGGGGCGCg -3'
miRNA:   3'- -UCUG---CGCCAUUu----------UGUCUCGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 147776 0.84 0.149113
Target:  5'- cGGACGCGGggggccCGGGGCGGGGgGCg -3'
miRNA:   3'- -UCUGCGCCauuuu-GUCUCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 147474 0.83 0.169453
Target:  5'- cAGAgGCGGcGGAGgGGAGCGGGGCGg -3'
miRNA:   3'- -UCUgCGCCaUUUUgUCUCGCCCCGCg -5'
5640 3' -55.1 NC_001806.1 + 67222 0.82 0.202085
Target:  5'- gGGGCGCgcuggugggccaGGUGAGGCAGgucGGCGGGGUGCc -3'
miRNA:   3'- -UCUGCG------------CCAUUUUGUC---UCGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 151203 0.81 0.234274
Target:  5'- gAGGCGCGGcggAAGGCGGAa-GGGGCGCg -3'
miRNA:   3'- -UCUGCGCCa--UUUUGUCUcgCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 92908 0.8 0.283765
Target:  5'- -cGCGUGGUccgcGCAGGGCGGGGCGg -3'
miRNA:   3'- ucUGCGCCAuuu-UGUCUCGCCCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.