miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5640 3' -55.1 NC_001806.1 + 394 0.66 0.917274
Target:  5'- cGGGCuGCcacaGGUGAaaccAACAGAGCacGGCGCa -3'
miRNA:   3'- -UCUG-CG----CCAUU----UUGUCUCGccCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 1498 0.74 0.516834
Target:  5'- gGGGCGUcgucgucGGgcuccAGCAGGGCGcGGGCGCa -3'
miRNA:   3'- -UCUGCG-------CCauu--UUGUCUCGC-CCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 1829 0.69 0.805897
Target:  5'- cGcCGCGGcacAGGCGcAGCGGcGGCGCg -3'
miRNA:   3'- uCuGCGCCau-UUUGUcUCGCC-CCGCG- -5'
5640 3' -55.1 NC_001806.1 + 2508 0.67 0.892346
Target:  5'- -cACGCGGccuGGGCggcgGGGGCGGGcccgGCGCa -3'
miRNA:   3'- ucUGCGCCau-UUUG----UCUCGCCC----CGCG- -5'
5640 3' -55.1 NC_001806.1 + 2635 0.68 0.840083
Target:  5'- cGGCGCGcGggGAGCAGuaggccuccagGGCGGcGGcCGCg -3'
miRNA:   3'- uCUGCGC-CauUUUGUC-----------UCGCC-CC-GCG- -5'
5640 3' -55.1 NC_001806.1 + 2765 0.74 0.517816
Target:  5'- gGGGCGCGGgcGggccugcgccgcGGCGGccCGGGGCGCc -3'
miRNA:   3'- -UCUGCGCCauU------------UUGUCucGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 2811 0.71 0.730495
Target:  5'- uGGGCGgGGgcGGGCucGGGCcccgGGGGCGUg -3'
miRNA:   3'- -UCUGCgCCauUUUGu-CUCG----CCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 2848 0.85 0.137999
Target:  5'- gGGGCGCGGgcGcGgGGAGgGGGGCGCg -3'
miRNA:   3'- -UCUGCGCCauUuUgUCUCgCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 2987 0.73 0.608528
Target:  5'- cGGCGCGGgGAGGCGGcGGCGGccgccaGCGCg -3'
miRNA:   3'- uCUGCGCCaUUUUGUC-UCGCCc-----CGCG- -5'
5640 3' -55.1 NC_001806.1 + 3118 0.75 0.469734
Target:  5'- cAGGCGCGGgucccgcGGCAGcGCGGGGCcCa -3'
miRNA:   3'- -UCUGCGCCauu----UUGUCuCGCCCCGcG- -5'
5640 3' -55.1 NC_001806.1 + 3278 0.72 0.680278
Target:  5'- -cACGCGc----GCAG-GCGGGGCGCg -3'
miRNA:   3'- ucUGCGCcauuuUGUCuCGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 3552 0.68 0.839263
Target:  5'- cGGGCGCGGcGGAcagccgcccCAGGGCGGcgaggauccccgcGGCGCc -3'
miRNA:   3'- -UCUGCGCCaUUUu--------GUCUCGCC-------------CCGCG- -5'
5640 3' -55.1 NC_001806.1 + 4406 0.69 0.831803
Target:  5'- uGGGCGCGGccucgGAGAgGGgggguggcccgGGCGGGG-GCg -3'
miRNA:   3'- -UCUGCGCCa----UUUUgUC-----------UCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 4674 0.67 0.905282
Target:  5'- cGGGCGCGGcGAcaGGCGGuccGUGGGGUcCg -3'
miRNA:   3'- -UCUGCGCCaUU--UUGUCu--CGCCCCGcG- -5'
5640 3' -55.1 NC_001806.1 + 4828 0.66 0.928308
Target:  5'- cGGgGCGGcGAGgccGCGGGGUcGGGCGUc -3'
miRNA:   3'- uCUgCGCCaUUU---UGUCUCGcCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 5092 0.76 0.442001
Target:  5'- uGGGCGgcggcccguCGGUGGGGCccggGGAGcCGGGGCGCu -3'
miRNA:   3'- -UCUGC---------GCCAUUUUG----UCUC-GCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 5647 0.67 0.892346
Target:  5'- --cCGCGccaucuGCcauGGGCGGGGCGCg -3'
miRNA:   3'- ucuGCGCcauuu-UGu--CUCGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 5937 0.66 0.917274
Target:  5'- cGGCG-GGcGGGACcgccccaagGGGGCGGGGcCGCc -3'
miRNA:   3'- uCUGCgCCaUUUUG---------UCUCGCCCC-GCG- -5'
5640 3' -55.1 NC_001806.1 + 6078 0.68 0.848172
Target:  5'- cGGGgGCGGgcc--CGGgcGGCGGGGgGCg -3'
miRNA:   3'- -UCUgCGCCauuuuGUC--UCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 6186 0.66 0.933463
Target:  5'- gAGcACGCGGaccg--GGAGCGGGaGuCGCa -3'
miRNA:   3'- -UC-UGCGCCauuuugUCUCGCCC-C-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.