miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5640 5' -57.4 NC_001806.1 + 12499 0.66 0.855352
Target:  5'- gGUGCgacagGCGgaacaGGUGCGCgucccCCGCUACCg -3'
miRNA:   3'- -CAUG-----UGCag---CCACGCGa----GGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 78695 0.66 0.855352
Target:  5'- -cGCcCGUCGucgugGCGCUCCGCaaCACCa -3'
miRNA:   3'- caUGuGCAGCca---CGCGAGGUG--GUGGa -5'
5640 5' -57.4 NC_001806.1 + 136304 0.66 0.855352
Target:  5'- aUACACG-CGGU-CGUagUCCGCCACg- -3'
miRNA:   3'- cAUGUGCaGCCAcGCG--AGGUGGUGga -5'
5640 5' -57.4 NC_001806.1 + 64918 0.66 0.847537
Target:  5'- ---gGCGUCGGcGCGUgugggUCUACCGCUg -3'
miRNA:   3'- caugUGCAGCCaCGCG-----AGGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 68548 0.66 0.847537
Target:  5'- -gACACGUCccaUGCGCuggauUCCGCCgGCCUg -3'
miRNA:   3'- caUGUGCAGcc-ACGCG-----AGGUGG-UGGA- -5'
5640 5' -57.4 NC_001806.1 + 24675 0.66 0.847537
Target:  5'- -gGCGCGaggCGGUGCGCgCCgGCCcgGCCc -3'
miRNA:   3'- caUGUGCa--GCCACGCGaGG-UGG--UGGa -5'
5640 5' -57.4 NC_001806.1 + 110985 0.66 0.839531
Target:  5'- cGUGgGCGgugCGG-GCGCUCCuCCugUa -3'
miRNA:   3'- -CAUgUGCa--GCCaCGCGAGGuGGugGa -5'
5640 5' -57.4 NC_001806.1 + 126554 0.66 0.836276
Target:  5'- -cACGCcUCGGgcgaaaaaaggcgGUGCUCCGCCGCg- -3'
miRNA:   3'- caUGUGcAGCCa------------CGCGAGGUGGUGga -5'
5640 5' -57.4 NC_001806.1 + 1852 0.66 0.831338
Target:  5'- -gGCGCGUCGGgguacagGCGCgcgugCGCgGCCUc -3'
miRNA:   3'- caUGUGCAGCCa------CGCGag---GUGgUGGA- -5'
5640 5' -57.4 NC_001806.1 + 85173 0.67 0.822968
Target:  5'- -aACGCGggagaCGG-GCGgUUCGCCGCCa -3'
miRNA:   3'- caUGUGCa----GCCaCGCgAGGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 83195 0.67 0.822968
Target:  5'- -cGCcCGUCGGUaCGCUCgacgaggacguCGCCGCCg -3'
miRNA:   3'- caUGuGCAGCCAcGCGAG-----------GUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 55036 0.67 0.814427
Target:  5'- cGUGCACGUCGccuugaacgGCugaccCUCCAUCACCg -3'
miRNA:   3'- -CAUGUGCAGCca-------CGc----GAGGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 131358 0.67 0.805723
Target:  5'- -gGCGCuGUCGGa--GCUCC-CCACCg -3'
miRNA:   3'- caUGUG-CAGCCacgCGAGGuGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 124211 0.67 0.805723
Target:  5'- --gUugGUCGGggagUGCGUUCUACgCGCCg -3'
miRNA:   3'- cauGugCAGCC----ACGCGAGGUG-GUGGa -5'
5640 5' -57.4 NC_001806.1 + 1807 0.67 0.805723
Target:  5'- -cGCACG-CGGUaGCGCacguugCCGCCGCg- -3'
miRNA:   3'- caUGUGCaGCCA-CGCGa-----GGUGGUGga -5'
5640 5' -57.4 NC_001806.1 + 9831 0.67 0.796865
Target:  5'- -cGCGCuGUgGGagggGCuGUUCCACCACCg -3'
miRNA:   3'- caUGUG-CAgCCa---CG-CGAGGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 136362 0.67 0.796865
Target:  5'- -aACcCGgggcCGGcGCGCUCCGCgGCCUc -3'
miRNA:   3'- caUGuGCa---GCCaCGCGAGGUGgUGGA- -5'
5640 5' -57.4 NC_001806.1 + 23716 0.67 0.778718
Target:  5'- --cCGCG-CGGUGCGCcgggcccgcccCCGCCGCCc -3'
miRNA:   3'- cauGUGCaGCCACGCGa----------GGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 23891 0.68 0.769446
Target:  5'- cGUGCGCGUggUGGUGCuGUacucgCCGCUGCCg -3'
miRNA:   3'- -CAUGUGCA--GCCACG-CGa----GGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 76257 0.68 0.731245
Target:  5'- -cGCGCGaUCGGaagcgugGCGCUggaccuggCCGCCGCCg -3'
miRNA:   3'- caUGUGC-AGCCa------CGCGA--------GGUGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.