Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5647 | 3' | -57.2 | NC_001806.1 | + | 20713 | 0.66 | 0.860572 |
Target: 5'- cGGGGUgggccCGCCGGGgggGCGggGGGCcgGCg -3' miRNA: 3'- uCCUCA-----GCGGCCUa--UGCa-CCCGcaUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 45308 | 0.66 | 0.875277 |
Target: 5'- gGGGAGcCGcCCGGcgAgGaGGGCGgGCg -3' miRNA: 3'- -UCCUCaGC-GGCCuaUgCaCCCGCaUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 13142 | 0.66 | 0.880923 |
Target: 5'- gGGGAGagGCaggcugacggggGGAUGCGcagcgggaGGGCGUACu -3' miRNA: 3'- -UCCUCagCGg-----------CCUAUGCa-------CCCGCAUG- -5' |
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5647 | 3' | -57.2 | NC_001806.1 | + | 39559 | 0.66 | 0.882313 |
Target: 5'- gAGGuaGGUgGCCGGGgccaccaucuUGUGGGCGggACu -3' miRNA: 3'- -UCC--UCAgCGGCCUau--------GCACCCGCa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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