Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5647 | 5' | -61.4 | NC_001806.1 | + | 92926 | 0.66 | 0.69866 |
Target: 5'- -cGggGCgggCCUggagGCCGGgGCCCgCGCg -3' miRNA: 3'- gaCaaCGa--GGAg---CGGCCgUGGGgGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 3666 | 0.71 | 0.374699 |
Target: 5'- ---cUGCgCCggCGCCGGgGCuCCCCGCg -3' miRNA: 3'- gacaACGaGGa-GCGGCCgUG-GGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 96360 | 0.71 | 0.390657 |
Target: 5'- -cGUaGUcCCgccaugCGCCagGGCGCCCCCGCg -3' miRNA: 3'- gaCAaCGaGGa-----GCGG--CCGUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 21421 | 0.71 | 0.407052 |
Target: 5'- ----cGCggCCUCGCCGccccGgACCCCCGCc -3' miRNA: 3'- gacaaCGa-GGAGCGGC----CgUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 22055 | 0.71 | 0.407052 |
Target: 5'- -cGUgGC-CCggCGCCGG-GCCCCCGCc -3' miRNA: 3'- gaCAaCGaGGa-GCGGCCgUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 24151 | 0.7 | 0.432437 |
Target: 5'- uCUGggGCUgCUCGCCaGCGCCggcgaCCgGCg -3' miRNA: 3'- -GACaaCGAgGAGCGGcCGUGG-----GGgCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 140010 | 0.7 | 0.432437 |
Target: 5'- cCUGggucaGCUCCUCGCgCGGCgaaaGCgCCCGg -3' miRNA: 3'- -GACaa---CGAGGAGCG-GCCG----UGgGGGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 21577 | 0.7 | 0.449864 |
Target: 5'- cCUGUcGCcgcgCC-CGCCGGCccaGCCgCCGCg -3' miRNA: 3'- -GACAaCGa---GGaGCGGCCG---UGGgGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 30166 | 0.7 | 0.458721 |
Target: 5'- ----gGCUCCgcccccCGCCccgGGC-CCCCCGCg -3' miRNA: 3'- gacaaCGAGGa-----GCGG---CCGuGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 115411 | 0.71 | 0.366887 |
Target: 5'- ----gGggCCUCGCCGGUgcucaGCCCCUGCu -3' miRNA: 3'- gacaaCgaGGAGCGGCCG-----UGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 24802 | 0.72 | 0.344132 |
Target: 5'- -gGggGC-CCUgcCGCCGGCGCCgCCCGg -3' miRNA: 3'- gaCaaCGaGGA--GCGGCCGUGG-GGGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 73081 | 0.72 | 0.336775 |
Target: 5'- -cGgaGCcugUCCUCGCCucGGCACCCCC-Cg -3' miRNA: 3'- gaCaaCG---AGGAGCGG--CCGUGGGGGcG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 4929 | 0.76 | 0.203658 |
Target: 5'- ----gGCgUCCUCGCCGGCgucgguGCCCgCCGCg -3' miRNA: 3'- gacaaCG-AGGAGCGGCCG------UGGG-GGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 33913 | 0.75 | 0.218696 |
Target: 5'- -gGUUGUUCCUCGCCuccccCACaCCCCGCc -3' miRNA: 3'- gaCAACGAGGAGCGGcc---GUG-GGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 85702 | 0.75 | 0.223916 |
Target: 5'- -aGUUucCUCCgccguagCGCCGGCACCCaCCGCc -3' miRNA: 3'- gaCAAc-GAGGa------GCGGCCGUGGG-GGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 57882 | 0.74 | 0.263466 |
Target: 5'- ----cGCcaUCCUCGCCccccgaGCGCCCCCGCu -3' miRNA: 3'- gacaaCG--AGGAGCGGc-----CGUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 106770 | 0.73 | 0.282083 |
Target: 5'- ----gGCUCCgCGCUGGaCGCCUCCGCc -3' miRNA: 3'- gacaaCGAGGaGCGGCC-GUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 26523 | 0.72 | 0.329534 |
Target: 5'- ----cGCcCCcCGCCGGUggGCCCCCGCc -3' miRNA: 3'- gacaaCGaGGaGCGGCCG--UGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 63712 | 0.72 | 0.336775 |
Target: 5'- gCUGggcCUCUUCGCCGGCgaggACCCCCu- -3' miRNA: 3'- -GACaacGAGGAGCGGCCG----UGGGGGcg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 148754 | 0.72 | 0.336775 |
Target: 5'- -cGUcGCUCCcccCGUCcucucgagggggGGCGCCCCCGCa -3' miRNA: 3'- gaCAaCGAGGa--GCGG------------CCGUGGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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