miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 75 0.66 0.69866
Target:  5'- uCUGgccGCUCCUC-CCcccGCuccucCCCCCGCu -3'
miRNA:   3'- -GACaa-CGAGGAGcGGc--CGu----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 726 0.69 0.523114
Target:  5'- ----aGC-CCUCcCCGGCGCgUCCCGCg -3'
miRNA:   3'- gacaaCGaGGAGcGGCCGUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 976 0.68 0.551779
Target:  5'- ----cGCcCCUCGCCcccuccCGCCCCCGCc -3'
miRNA:   3'- gacaaCGaGGAGCGGcc----GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 3666 0.71 0.374699
Target:  5'- ---cUGCgCCggCGCCGGgGCuCCCCGCg -3'
miRNA:   3'- gacaACGaGGa-GCGGCCgUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 4110 0.66 0.659584
Target:  5'- ----cGcCUCCUcCGCCucgGGCGCCCCC-Ca -3'
miRNA:   3'- gacaaC-GAGGA-GCGG---CCGUGGGGGcG- -5'
5647 5' -61.4 NC_001806.1 + 4929 0.76 0.203658
Target:  5'- ----gGCgUCCUCGCCGGCgucgguGCCCgCCGCg -3'
miRNA:   3'- gacaaCG-AGGAGCGGCCG------UGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 5504 0.67 0.620177
Target:  5'- -aGgaGCagCggaggcCGCCGGC-CCCCCGCc -3'
miRNA:   3'- gaCaaCGagGa-----GCGGCCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 16719 0.67 0.620177
Target:  5'- -cGggGCgUCCUCGUcgacaucguccgCGGCAUCCgCGCu -3'
miRNA:   3'- gaCaaCG-AGGAGCG------------GCCGUGGGgGCG- -5'
5647 5' -61.4 NC_001806.1 + 20092 0.68 0.561442
Target:  5'- -cGUcGUUCgUgGCCGGCGCCgUCUGCg -3'
miRNA:   3'- gaCAaCGAGgAgCGGCCGUGG-GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 20753 0.66 0.679194
Target:  5'- -cGcUGCUCCUccuuccCGCCGGC-CCCUgGg -3'
miRNA:   3'- gaCaACGAGGA------GCGGCCGuGGGGgCg -5'
5647 5' -61.4 NC_001806.1 + 21421 0.71 0.407052
Target:  5'- ----cGCggCCUCGCCGccccGgACCCCCGCc -3'
miRNA:   3'- gacaaCGa-GGAGCGGC----CgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 21577 0.7 0.449864
Target:  5'- cCUGUcGCcgcgCC-CGCCGGCccaGCCgCCGCg -3'
miRNA:   3'- -GACAaCGa---GGaGCGGCCG---UGGgGGCG- -5'
5647 5' -61.4 NC_001806.1 + 21788 0.66 0.659584
Target:  5'- ----aGCgcggCGCCGGCAgCCCCCGg -3'
miRNA:   3'- gacaaCGaggaGCGGCCGU-GGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 21861 0.66 0.69866
Target:  5'- ----aGCcCCgggCGgCGGCgaggACCCCCGCg -3'
miRNA:   3'- gacaaCGaGGa--GCgGCCG----UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 22055 0.71 0.407052
Target:  5'- -cGUgGC-CCggCGCCGG-GCCCCCGCc -3'
miRNA:   3'- gaCAaCGaGGa-GCGGCCgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 22689 0.68 0.561442
Target:  5'- cCUGggGCggcugUCCgccgCGCCcGCcuCCCCCGCg -3'
miRNA:   3'- -GACaaCG-----AGGa---GCGGcCGu-GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 22893 0.67 0.600496
Target:  5'- -cGggGCccggCC-CGCCaGC-CCCCCGCg -3'
miRNA:   3'- gaCaaCGa---GGaGCGGcCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 23719 0.66 0.69866
Target:  5'- ----cGCggugCGCCGGgccCGCCCCCGCc -3'
miRNA:   3'- gacaaCGaggaGCGGCC---GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 24151 0.7 0.432437
Target:  5'- uCUGggGCUgCUCGCCaGCGCCggcgaCCgGCg -3'
miRNA:   3'- -GACaaCGAgGAGCGGcCGUGG-----GGgCG- -5'
5647 5' -61.4 NC_001806.1 + 24802 0.72 0.344132
Target:  5'- -gGggGC-CCUgcCGCCGGCGCCgCCCGg -3'
miRNA:   3'- gaCaaCGaGGA--GCGGCCGUGG-GGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.