miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 26523 0.72 0.329534
Target:  5'- ----cGCcCCcCGCCGGUggGCCCCCGCc -3'
miRNA:   3'- gacaaCGaGGaGCGGCCG--UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 29764 0.68 0.542166
Target:  5'- ----cGCcCCcCGCCGGaCGCCCCgCGCc -3'
miRNA:   3'- gacaaCGaGGaGCGGCC-GUGGGG-GCG- -5'
5647 5' -61.4 NC_001806.1 + 30166 0.7 0.458721
Target:  5'- ----gGCUCCgcccccCGCCccgGGC-CCCCCGCg -3'
miRNA:   3'- gacaaCGAGGa-----GCGG---CCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 30710 0.68 0.580901
Target:  5'- ---cUGCcucuUCCUCcUCGGCcccgACCCCCGCg -3'
miRNA:   3'- gacaACG----AGGAGcGGCCG----UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 33913 0.75 0.218696
Target:  5'- -gGUUGUUCCUCGCCuccccCACaCCCCGCc -3'
miRNA:   3'- gaCAACGAGGAGCGGcc---GUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 34685 0.67 0.600496
Target:  5'- -------aCCUC-CCGcGCACCCCCGCc -3'
miRNA:   3'- gacaacgaGGAGcGGC-CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 38688 0.67 0.589704
Target:  5'- -----cCUCCUCGUuccgccccccgggCGGgGCCCCCGCc -3'
miRNA:   3'- gacaacGAGGAGCG-------------GCCgUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 40372 0.66 0.688949
Target:  5'- ---aUGCgaaccCCUCGaCGGUccCCCCCGCa -3'
miRNA:   3'- gacaACGa----GGAGCgGCCGu-GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 45264 0.66 0.688949
Target:  5'- uUGUcuUGCUCgUCGCCuuagcGGCgggagacgcggGCCCgCGCg -3'
miRNA:   3'- gACA--ACGAGgAGCGG-----CCG-----------UGGGgGCG- -5'
5647 5' -61.4 NC_001806.1 + 46101 0.7 0.458721
Target:  5'- uUGUccgGCccggggCCUgCGCgGGCGCCUCCGCc -3'
miRNA:   3'- gACAa--CGa-----GGA-GCGgCCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 48313 0.66 0.688949
Target:  5'- gCUGgcgGCUCCgCGCCuGUccuuucUCCCCGCg -3'
miRNA:   3'- -GACaa-CGAGGaGCGGcCGu-----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 49656 0.66 0.679194
Target:  5'- -cGgaGCUCCg-GgCGGCAUUCCCGUu -3'
miRNA:   3'- gaCaaCGAGGagCgGCCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 50167 0.66 0.649744
Target:  5'- gUGUUccGCagCUCGCUGGggUCCCUGCu -3'
miRNA:   3'- gACAA--CGagGAGCGGCCguGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 52008 0.67 0.590684
Target:  5'- -aGUccCUCCaaUCGCCGGUuCCuCCCGCu -3'
miRNA:   3'- gaCAacGAGG--AGCGGCCGuGG-GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 52707 0.68 0.571151
Target:  5'- -cGgagGUUCCggaggCGCCGcGCggacggcgcgggGCCCCCGCu -3'
miRNA:   3'- gaCaa-CGAGGa----GCGGC-CG------------UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 52756 0.66 0.69866
Target:  5'- ---aUGCgaacgacCCggUCGCCGaGC-CCCCCGCu -3'
miRNA:   3'- gacaACGa------GG--AGCGGC-CGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 55257 0.66 0.69866
Target:  5'- -cGgcGC-CCggGCCGGCcCCCuCCGCc -3'
miRNA:   3'- gaCaaCGaGGagCGGCCGuGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 57882 0.74 0.263466
Target:  5'- ----cGCcaUCCUCGCCccccgaGCGCCCCCGCu -3'
miRNA:   3'- gacaaCG--AGGAGCGGc-----CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 62368 0.67 0.620177
Target:  5'- aUGUUG-UCgUCGCCGcCAaagaCCCCGCu -3'
miRNA:   3'- gACAACgAGgAGCGGCcGUg---GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 63712 0.72 0.336775
Target:  5'- gCUGggcCUCUUCGCCGGCgaggACCCCCu- -3'
miRNA:   3'- -GACaacGAGGAGCGGCCG----UGGGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.