miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 132447 0.7 0.458721
Target:  5'- -aGUU-CUCCgCGCCGGCGCUCgUCGCc -3'
miRNA:   3'- gaCAAcGAGGaGCGGCCGUGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 98712 0.7 0.458721
Target:  5'- uCUGUUGgUCCUgGCCGGCcuggcggcgGCCUucuUCGCc -3'
miRNA:   3'- -GACAACgAGGAgCGGCCG---------UGGG---GGCG- -5'
5647 5' -61.4 NC_001806.1 + 30166 0.7 0.458721
Target:  5'- ----gGCUCCgcccccCGCCccgGGC-CCCCCGCg -3'
miRNA:   3'- gacaaCGAGGa-----GCGG---CCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 72128 0.7 0.467671
Target:  5'- ----cGUUCUUCGCCGGCccgugGgCCCUGCg -3'
miRNA:   3'- gacaaCGAGGAGCGGCCG-----UgGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 114339 0.7 0.467671
Target:  5'- -cGcUGCUCugCUCGgCGGCGCCCgaCGCg -3'
miRNA:   3'- gaCaACGAG--GAGCgGCCGUGGGg-GCG- -5'
5647 5' -61.4 NC_001806.1 + 78905 0.7 0.467671
Target:  5'- cCUGUccgcGCUCaUCGCCGaGCgGCCCCuCGCc -3'
miRNA:   3'- -GACAa---CGAGgAGCGGC-CG-UGGGG-GCG- -5'
5647 5' -61.4 NC_001806.1 + 104438 0.69 0.475801
Target:  5'- -cGUUGCgcCCUCGCCGGCaacaaaaaGCCacggaagUCCGCc -3'
miRNA:   3'- gaCAACGa-GGAGCGGCCG--------UGG-------GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 129646 0.69 0.504325
Target:  5'- ----aGCUCCU-GCaGGCugCCCUGCg -3'
miRNA:   3'- gacaaCGAGGAgCGgCCGugGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 726 0.69 0.523114
Target:  5'- ----aGC-CCUCcCCGGCGCgUCCCGCg -3'
miRNA:   3'- gacaaCGaGGAGcGGCCGUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 106694 0.69 0.523114
Target:  5'- -gGggGCUCUUC-CCGG-GCCCCCGg -3'
miRNA:   3'- gaCaaCGAGGAGcGGCCgUGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 102974 0.69 0.523114
Target:  5'- -cGUcGCcCCcaccCGCCGGCucAUCCCCGCg -3'
miRNA:   3'- gaCAaCGaGGa---GCGGCCG--UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 104069 0.68 0.532609
Target:  5'- -cGUUGCUCgcgUUUGCUGGCGgugUCCCCGg -3'
miRNA:   3'- gaCAACGAG---GAGCGGCCGU---GGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 102585 0.68 0.542166
Target:  5'- -gGUcGCUa-UCGUCGGCGgCCCCGUg -3'
miRNA:   3'- gaCAaCGAggAGCGGCCGUgGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 29764 0.68 0.542166
Target:  5'- ----cGCcCCcCGCCGGaCGCCCCgCGCc -3'
miRNA:   3'- gacaaCGaGGaGCGGCC-GUGGGG-GCG- -5'
5647 5' -61.4 NC_001806.1 + 69253 0.68 0.542166
Target:  5'- ----aGC-CCUcCGCCGGCGCCCagcaGCg -3'
miRNA:   3'- gacaaCGaGGA-GCGGCCGUGGGgg--CG- -5'
5647 5' -61.4 NC_001806.1 + 78606 0.68 0.551779
Target:  5'- -cGUcGCcgugCCggcCGCCGccacccaccGCACCCCCGCg -3'
miRNA:   3'- gaCAaCGa---GGa--GCGGC---------CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 135622 0.68 0.551779
Target:  5'- gCUGUUGCgcgCCggagcUCGCgGucGCGCUCCUGCa -3'
miRNA:   3'- -GACAACGa--GG-----AGCGgC--CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 976 0.68 0.551779
Target:  5'- ----cGCcCCUCGCCcccuccCGCCCCCGCc -3'
miRNA:   3'- gacaaCGaGGAGCGGcc----GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 20092 0.68 0.561442
Target:  5'- -cGUcGUUCgUgGCCGGCGCCgUCUGCg -3'
miRNA:   3'- gaCAaCGAGgAgCGGCCGUGG-GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 22689 0.68 0.561442
Target:  5'- cCUGggGCggcugUCCgccgCGCCcGCcuCCCCCGCg -3'
miRNA:   3'- -GACaaCG-----AGGa---GCGGcCGu-GGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.