miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 102974 0.69 0.523114
Target:  5'- -cGUcGCcCCcaccCGCCGGCucAUCCCCGCg -3'
miRNA:   3'- gaCAaCGaGGa---GCGGCCG--UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 102585 0.68 0.542166
Target:  5'- -gGUcGCUa-UCGUCGGCGgCCCCGUg -3'
miRNA:   3'- gaCAaCGAggAGCGGCCGUgGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 98712 0.7 0.458721
Target:  5'- uCUGUUGgUCCUgGCCGGCcuggcggcgGCCUucuUCGCc -3'
miRNA:   3'- -GACAACgAGGAgCGGCCG---------UGGG---GGCG- -5'
5647 5' -61.4 NC_001806.1 + 96360 0.71 0.390657
Target:  5'- -cGUaGUcCCgccaugCGCCagGGCGCCCCCGCg -3'
miRNA:   3'- gaCAaCGaGGa-----GCGG--CCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 92926 0.66 0.69866
Target:  5'- -cGggGCgggCCUggagGCCGGgGCCCgCGCg -3'
miRNA:   3'- gaCaaCGa--GGAg---CGGCCgUGGGgGCG- -5'
5647 5' -61.4 NC_001806.1 + 92333 0.66 0.669403
Target:  5'- ---cUGCgcccccagCCUaacgGCCGGCcagacgGCCCCCGCc -3'
miRNA:   3'- gacaACGa-------GGAg---CGGCCG------UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 89106 0.66 0.679194
Target:  5'- -gGggGCaUCCUCGuCCaGCACCCgCGg -3'
miRNA:   3'- gaCaaCG-AGGAGC-GGcCGUGGGgGCg -5'
5647 5' -61.4 NC_001806.1 + 87321 0.67 0.639892
Target:  5'- ----gGCUCC-CGCU--CGCCCCCGCc -3'
miRNA:   3'- gacaaCGAGGaGCGGccGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 85702 0.75 0.223916
Target:  5'- -aGUUucCUCCgccguagCGCCGGCACCCaCCGCc -3'
miRNA:   3'- gaCAAc-GAGGa------GCGGCCGUGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 84038 1.1 0.000841
Target:  5'- cCUGUUGCUCCUCGCCGGCACCCCCGCc -3'
miRNA:   3'- -GACAACGAGGAGCGGCCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 80693 0.68 0.580901
Target:  5'- uCUGggGUgUCUUCGUgGGCAuccuCCCUCGCg -3'
miRNA:   3'- -GACaaCG-AGGAGCGgCCGU----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 78905 0.7 0.467671
Target:  5'- cCUGUccgcGCUCaUCGCCGaGCgGCCCCuCGCc -3'
miRNA:   3'- -GACAa---CGAGgAGCGGC-CG-UGGGG-GCG- -5'
5647 5' -61.4 NC_001806.1 + 78606 0.68 0.551779
Target:  5'- -cGUcGCcgugCCggcCGCCGccacccaccGCACCCCCGCg -3'
miRNA:   3'- gaCAaCGa---GGa--GCGGC---------CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 77395 0.68 0.571151
Target:  5'- -cGcgGCggCCgCGCCcGCGCCCCUGCu -3'
miRNA:   3'- gaCaaCGa-GGaGCGGcCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 74320 0.67 0.63792
Target:  5'- cCUGUUGCgggaucugaUCCagcggggccagaCGCUGGaCGCCCCCGa -3'
miRNA:   3'- -GACAACG---------AGGa-----------GCGGCC-GUGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 73081 0.72 0.336775
Target:  5'- -cGgaGCcugUCCUCGCCucGGCACCCCC-Cg -3'
miRNA:   3'- gaCaaCG---AGGAGCGG--CCGUGGGGGcG- -5'
5647 5' -61.4 NC_001806.1 + 72516 0.66 0.669403
Target:  5'- cCUGggggaGC-CCUgCGUCGGCguggGCCCCCGg -3'
miRNA:   3'- -GACaa---CGaGGA-GCGGCCG----UGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 72128 0.7 0.467671
Target:  5'- ----cGUUCUUCGCCGGCccgugGgCCCUGCg -3'
miRNA:   3'- gacaaCGAGGAGCGGCCG-----UgGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 69253 0.68 0.542166
Target:  5'- ----aGC-CCUcCGCCGGCGCCCagcaGCg -3'
miRNA:   3'- gacaaCGaGGA-GCGGCCGUGGGgg--CG- -5'
5647 5' -61.4 NC_001806.1 + 66635 0.66 0.649744
Target:  5'- ----cGCUCCaggGCCGGCuCCaaCCCGCg -3'
miRNA:   3'- gacaaCGAGGag-CGGCCGuGG--GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.