miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5647 5' -61.4 NC_001806.1 + 151785 0.66 0.69866
Target:  5'- uCUGgccGCUCCUC-CCcccGCuccucCCCCCGCu -3'
miRNA:   3'- -GACaa-CGAGGAGcGGc--CGu----GGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 148754 0.72 0.336775
Target:  5'- -cGUcGCUCCcccCGUCcucucgagggggGGCGCCCCCGCa -3'
miRNA:   3'- gaCAaCGAGGa--GCGG------------CCGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 148340 0.67 0.639892
Target:  5'- ----gGgUCCUUGCC-GC-CCCCCGCc -3'
miRNA:   3'- gacaaCgAGGAGCGGcCGuGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 140678 0.68 0.571151
Target:  5'- uUGUUGCUgcgcggcgcCCgcgugccgCGCUGGaaCGCCCCCGUc -3'
miRNA:   3'- gACAACGA---------GGa-------GCGGCC--GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 140010 0.7 0.432437
Target:  5'- cCUGggucaGCUCCUCGCgCGGCgaaaGCgCCCGg -3'
miRNA:   3'- -GACaa---CGAGGAGCG-GCCG----UGgGGGCg -5'
5647 5' -61.4 NC_001806.1 + 135622 0.68 0.551779
Target:  5'- gCUGUUGCgcgCCggagcUCGCgGucGCGCUCCUGCa -3'
miRNA:   3'- -GACAACGa--GG-----AGCGgC--CGUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 135011 0.66 0.649744
Target:  5'- ----cGC-CCUgGuCCGGCGCgCCUCGCg -3'
miRNA:   3'- gacaaCGaGGAgC-GGCCGUG-GGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 134646 0.66 0.679194
Target:  5'- gCUGUgcacgUGgUCCUCGuuGGCcgucaggaccGCCaCCGCg -3'
miRNA:   3'- -GACA-----ACgAGGAGCggCCG----------UGGgGGCG- -5'
5647 5' -61.4 NC_001806.1 + 132447 0.7 0.458721
Target:  5'- -aGUU-CUCCgCGCCGGCGCUCgUCGCc -3'
miRNA:   3'- gaCAAcGAGGaGCGGCCGUGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 129844 0.68 0.580901
Target:  5'- gCUGUUGCUUcaCUCGCU--CACCCCCc- -3'
miRNA:   3'- -GACAACGAG--GAGCGGccGUGGGGGcg -5'
5647 5' -61.4 NC_001806.1 + 129646 0.69 0.504325
Target:  5'- ----aGCUCCU-GCaGGCugCCCUGCg -3'
miRNA:   3'- gacaaCGAGGAgCGgCCGugGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 126632 0.66 0.669403
Target:  5'- ---gUGCUUCUguUUGGCGCCCCCGa -3'
miRNA:   3'- gacaACGAGGAgcGGCCGUGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 116911 0.67 0.590684
Target:  5'- -aGgcGCUCgUCGCCuGGCugaCCCaCGCg -3'
miRNA:   3'- gaCaaCGAGgAGCGG-CCGug-GGG-GCG- -5'
5647 5' -61.4 NC_001806.1 + 115411 0.71 0.366887
Target:  5'- ----gGggCCUCGCCGGUgcucaGCCCCUGCu -3'
miRNA:   3'- gacaaCgaGGAGCGGCCG-----UGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 114339 0.7 0.467671
Target:  5'- -cGcUGCUCugCUCGgCGGCGCCCgaCGCg -3'
miRNA:   3'- gaCaACGAG--GAGCgGCCGUGGGg-GCG- -5'
5647 5' -61.4 NC_001806.1 + 113091 0.66 0.669403
Target:  5'- gUGgcgGCcCCg-GCCGGC-CCCgCCGCa -3'
miRNA:   3'- gACaa-CGaGGagCGGCCGuGGG-GGCG- -5'
5647 5' -61.4 NC_001806.1 + 106770 0.73 0.282083
Target:  5'- ----gGCUCCgCGCUGGaCGCCUCCGCc -3'
miRNA:   3'- gacaaCGAGGaGCGGCC-GUGGGGGCG- -5'
5647 5' -61.4 NC_001806.1 + 106694 0.69 0.523114
Target:  5'- -gGggGCUCUUC-CCGG-GCCCCCGg -3'
miRNA:   3'- gaCaaCGAGGAGcGGCCgUGGGGGCg -5'
5647 5' -61.4 NC_001806.1 + 104438 0.69 0.475801
Target:  5'- -cGUUGCgcCCUCGCCGGCaacaaaaaGCCacggaagUCCGCc -3'
miRNA:   3'- gaCAACGa-GGAGCGGCCG--------UGG-------GGGCG- -5'
5647 5' -61.4 NC_001806.1 + 104069 0.68 0.532609
Target:  5'- -cGUUGCUCgcgUUUGCUGGCGgugUCCCCGg -3'
miRNA:   3'- gaCAACGAG---GAGCGGCCGU---GGGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.