Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5658 | 3' | -58.9 | NC_001806.1 | + | 100300 | 0.66 | 0.800479 |
Target: 5'- ----aCGCGgaaugCGGCUGGgguuggGGCGCGGCa -3' miRNA: 3'- aagugGCGUa----GCUGACC------UCGCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 30491 | 0.66 | 0.800479 |
Target: 5'- -cCGCCGCcucuGUCGAgCaGGAG-GCGGCg -3' miRNA: 3'- aaGUGGCG----UAGCU-GaCCUCgCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 4797 | 0.66 | 0.800479 |
Target: 5'- gUCAUCGuCGUCGGCUcgaaaggcgGGGGUccgggGCGGCg -3' miRNA: 3'- aAGUGGC-GUAGCUGA---------CCUCG-----CGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 16892 | 0.66 | 0.800479 |
Target: 5'- --gGCaCGCGuccUCGGCUGGGGUauaaaaGgGGCCa -3' miRNA: 3'- aagUG-GCGU---AGCUGACCUCG------CgCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 95483 | 0.66 | 0.800479 |
Target: 5'- --gGCCGCG--GACgugcgGGAGCGaCGGCg -3' miRNA: 3'- aagUGGCGUagCUGa----CCUCGC-GCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 97037 | 0.66 | 0.799596 |
Target: 5'- uUUCACCGgGaCGACcacgagaccgacaUGGAGCugaaacCGGCCa -3' miRNA: 3'- -AAGUGGCgUaGCUG-------------ACCUCGc-----GCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 109395 | 0.66 | 0.797826 |
Target: 5'- -aCcCCGCcccCGACccggcgaugggucgUGGGGCGCGGCg -3' miRNA: 3'- aaGuGGCGua-GCUG--------------ACCUCGCGCCGg -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 33663 | 0.66 | 0.791583 |
Target: 5'- gUCGCgGgcCGUCuGCUGGccCGCGGCCa -3' miRNA: 3'- aAGUGgC--GUAGcUGACCucGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 95672 | 0.66 | 0.791583 |
Target: 5'- cUUCugCGCccUGACgGcGGGCGCGGgCa -3' miRNA: 3'- -AAGugGCGuaGCUGaC-CUCGCGCCgG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 30389 | 0.66 | 0.791583 |
Target: 5'- --gGgCGCGUgCGACggUGGcGCGCGGCUc -3' miRNA: 3'- aagUgGCGUA-GCUG--ACCuCGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 85728 | 0.66 | 0.791583 |
Target: 5'- -cCACCGCccCGAacccugcgguCcGGAgccGCGCGGCCa -3' miRNA: 3'- aaGUGGCGuaGCU----------GaCCU---CGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 101893 | 0.66 | 0.782547 |
Target: 5'- -cCGCCGCGUCGACccGA-C-CGGCCg -3' miRNA: 3'- aaGUGGCGUAGCUGacCUcGcGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 29955 | 0.66 | 0.782547 |
Target: 5'- gUCGCgaGCcgCGGCgccgcggGGGGCGUcuGGCCc -3' miRNA: 3'- aAGUGg-CGuaGCUGa------CCUCGCG--CCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 65711 | 0.66 | 0.782547 |
Target: 5'- ---cCCGCGcuUCGACgGGAGaggauGCGGCUg -3' miRNA: 3'- aaguGGCGU--AGCUGaCCUCg----CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 147648 | 0.66 | 0.782547 |
Target: 5'- --gGCgCGCGUCcGC-GGGGCggGCGGCCg -3' miRNA: 3'- aagUG-GCGUAGcUGaCCUCG--CGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 37898 | 0.66 | 0.782547 |
Target: 5'- cUCACUGCcgCGccacgccucGCcaugGGGGCGCcggGGCCg -3' miRNA: 3'- aAGUGGCGuaGC---------UGa---CCUCGCG---CCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 76887 | 0.66 | 0.782547 |
Target: 5'- gUCGCCGCGUCGAggccCUgcGGAGgucucuCGaggaGGCCg -3' miRNA: 3'- aAGUGGCGUAGCU----GA--CCUC------GCg---CCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 76015 | 0.66 | 0.781636 |
Target: 5'- -aCGCCGaCAuguuUCGGgUGGAcaccgagccccugGCGCGGCUu -3' miRNA: 3'- aaGUGGC-GU----AGCUgACCU-------------CGCGCCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 81347 | 0.66 | 0.77338 |
Target: 5'- --gGCCGCAaccaggCGGCcGGGGCGUcGCCc -3' miRNA: 3'- aagUGGCGUa-----GCUGaCCUCGCGcCGG- -5' |
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5658 | 3' | -58.9 | NC_001806.1 | + | 3661 | 0.66 | 0.77338 |
Target: 5'- gUCAuCUGCGcCGGCgccGGGGCuccccGCGGCCc -3' miRNA: 3'- aAGU-GGCGUaGCUGa--CCUCG-----CGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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