miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 3' -58.9 NC_001806.1 + 100300 0.66 0.800479
Target:  5'- ----aCGCGgaaugCGGCUGGgguuggGGCGCGGCa -3'
miRNA:   3'- aagugGCGUa----GCUGACC------UCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 30491 0.66 0.800479
Target:  5'- -cCGCCGCcucuGUCGAgCaGGAG-GCGGCg -3'
miRNA:   3'- aaGUGGCG----UAGCU-GaCCUCgCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 4797 0.66 0.800479
Target:  5'- gUCAUCGuCGUCGGCUcgaaaggcgGGGGUccgggGCGGCg -3'
miRNA:   3'- aAGUGGC-GUAGCUGA---------CCUCG-----CGCCGg -5'
5658 3' -58.9 NC_001806.1 + 16892 0.66 0.800479
Target:  5'- --gGCaCGCGuccUCGGCUGGGGUauaaaaGgGGCCa -3'
miRNA:   3'- aagUG-GCGU---AGCUGACCUCG------CgCCGG- -5'
5658 3' -58.9 NC_001806.1 + 95483 0.66 0.800479
Target:  5'- --gGCCGCG--GACgugcgGGAGCGaCGGCg -3'
miRNA:   3'- aagUGGCGUagCUGa----CCUCGC-GCCGg -5'
5658 3' -58.9 NC_001806.1 + 97037 0.66 0.799596
Target:  5'- uUUCACCGgGaCGACcacgagaccgacaUGGAGCugaaacCGGCCa -3'
miRNA:   3'- -AAGUGGCgUaGCUG-------------ACCUCGc-----GCCGG- -5'
5658 3' -58.9 NC_001806.1 + 109395 0.66 0.797826
Target:  5'- -aCcCCGCcccCGACccggcgaugggucgUGGGGCGCGGCg -3'
miRNA:   3'- aaGuGGCGua-GCUG--------------ACCUCGCGCCGg -5'
5658 3' -58.9 NC_001806.1 + 33663 0.66 0.791583
Target:  5'- gUCGCgGgcCGUCuGCUGGccCGCGGCCa -3'
miRNA:   3'- aAGUGgC--GUAGcUGACCucGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 95672 0.66 0.791583
Target:  5'- cUUCugCGCccUGACgGcGGGCGCGGgCa -3'
miRNA:   3'- -AAGugGCGuaGCUGaC-CUCGCGCCgG- -5'
5658 3' -58.9 NC_001806.1 + 30389 0.66 0.791583
Target:  5'- --gGgCGCGUgCGACggUGGcGCGCGGCUc -3'
miRNA:   3'- aagUgGCGUA-GCUG--ACCuCGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 85728 0.66 0.791583
Target:  5'- -cCACCGCccCGAacccugcgguCcGGAgccGCGCGGCCa -3'
miRNA:   3'- aaGUGGCGuaGCU----------GaCCU---CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 101893 0.66 0.782547
Target:  5'- -cCGCCGCGUCGACccGA-C-CGGCCg -3'
miRNA:   3'- aaGUGGCGUAGCUGacCUcGcGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 29955 0.66 0.782547
Target:  5'- gUCGCgaGCcgCGGCgccgcggGGGGCGUcuGGCCc -3'
miRNA:   3'- aAGUGg-CGuaGCUGa------CCUCGCG--CCGG- -5'
5658 3' -58.9 NC_001806.1 + 65711 0.66 0.782547
Target:  5'- ---cCCGCGcuUCGACgGGAGaggauGCGGCUg -3'
miRNA:   3'- aaguGGCGU--AGCUGaCCUCg----CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 147648 0.66 0.782547
Target:  5'- --gGCgCGCGUCcGC-GGGGCggGCGGCCg -3'
miRNA:   3'- aagUG-GCGUAGcUGaCCUCG--CGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 37898 0.66 0.782547
Target:  5'- cUCACUGCcgCGccacgccucGCcaugGGGGCGCcggGGCCg -3'
miRNA:   3'- aAGUGGCGuaGC---------UGa---CCUCGCG---CCGG- -5'
5658 3' -58.9 NC_001806.1 + 76887 0.66 0.782547
Target:  5'- gUCGCCGCGUCGAggccCUgcGGAGgucucuCGaggaGGCCg -3'
miRNA:   3'- aAGUGGCGUAGCU----GA--CCUC------GCg---CCGG- -5'
5658 3' -58.9 NC_001806.1 + 76015 0.66 0.781636
Target:  5'- -aCGCCGaCAuguuUCGGgUGGAcaccgagccccugGCGCGGCUu -3'
miRNA:   3'- aaGUGGC-GU----AGCUgACCU-------------CGCGCCGG- -5'
5658 3' -58.9 NC_001806.1 + 81347 0.66 0.77338
Target:  5'- --gGCCGCAaccaggCGGCcGGGGCGUcGCCc -3'
miRNA:   3'- aagUGGCGUa-----GCUGaCCUCGCGcCGG- -5'
5658 3' -58.9 NC_001806.1 + 3661 0.66 0.77338
Target:  5'- gUCAuCUGCGcCGGCgccGGGGCuccccGCGGCCc -3'
miRNA:   3'- aAGU-GGCGUaGCUGa--CCUCG-----CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.