miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 5' -55.9 NC_001806.1 + 148116 0.71 0.683234
Target:  5'- cGCGGCCGGCugGgGgGCUG-CGUGa- -3'
miRNA:   3'- -CGCCGGCUGugCaUgCGGCuGUACaa -5'
5658 5' -55.9 NC_001806.1 + 147756 0.67 0.872599
Target:  5'- cGCGGgucCCGACGCGgcCGCgGACGc--- -3'
miRNA:   3'- -CGCC---GGCUGUGCauGCGgCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 136999 0.66 0.923718
Target:  5'- gGCGGCCGGCGgGgaGCGCCagcuaGACGg--- -3'
miRNA:   3'- -CGCCGGCUGUgCa-UGCGG-----CUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 134832 0.71 0.69333
Target:  5'- cGCGGCUGGCG-GU-CGCCGACcUGg- -3'
miRNA:   3'- -CGCCGGCUGUgCAuGCGGCUGuACaa -5'
5658 5' -55.9 NC_001806.1 + 131878 0.66 0.918145
Target:  5'- gGCGGCCGcccgcgcCGCGacgACGCCGGCc---- -3'
miRNA:   3'- -CGCCGGCu------GUGCa--UGCGGCUGuacaa -5'
5658 5' -55.9 NC_001806.1 + 126130 0.66 0.912333
Target:  5'- cGCGGaCGACgGCGgcgaggccgGCGCCGACAc--- -3'
miRNA:   3'- -CGCCgGCUG-UGCa--------UGCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 125855 0.69 0.789984
Target:  5'- cCGGCCGcCGCGgACGCCGugGc--- -3'
miRNA:   3'- cGCCGGCuGUGCaUGCGGCugUacaa -5'
5658 5' -55.9 NC_001806.1 + 118251 0.67 0.849776
Target:  5'- -aGGCCGugGCGUuuguguGCGUcaccacccuCGGCAUGUg -3'
miRNA:   3'- cgCCGGCugUGCA------UGCG---------GCUGUACAa -5'
5658 5' -55.9 NC_001806.1 + 114352 0.66 0.912333
Target:  5'- gGCGGCgccCGACGCGgGCGCCaACAc--- -3'
miRNA:   3'- -CGCCG---GCUGUGCaUGCGGcUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 103938 0.68 0.833567
Target:  5'- cGCGGCUGACGCGgagcguccgUugGgCGACAa--- -3'
miRNA:   3'- -CGCCGGCUGUGC---------AugCgGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 102274 0.66 0.918145
Target:  5'- cGCGGCggCGGCGCGguuUAUGUCGuCGUGg- -3'
miRNA:   3'- -CGCCG--GCUGUGC---AUGCGGCuGUACaa -5'
5658 5' -55.9 NC_001806.1 + 98541 0.7 0.742863
Target:  5'- --cGCCGACGCcaACGCCGcCAUGUUu -3'
miRNA:   3'- cgcCGGCUGUGcaUGCGGCuGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 98237 0.67 0.879785
Target:  5'- uGCGGCUGACGCGcgaUGCGaUCGAgcCGUGc- -3'
miRNA:   3'- -CGCCGGCUGUGC---AUGC-GGCU--GUACaa -5'
5658 5' -55.9 NC_001806.1 + 95506 0.66 0.923718
Target:  5'- gGCGGCUGuACGCGgacCGCCuGACGa--- -3'
miRNA:   3'- -CGCCGGC-UGUGCau-GCGG-CUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 94867 0.73 0.561168
Target:  5'- -aGGCCGACGCccugcuggagGCGCaCGACGUGUUu -3'
miRNA:   3'- cgCCGGCUGUGca--------UGCG-GCUGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 89603 0.69 0.752517
Target:  5'- gGCGGCCGACaggagagugACGUA-GCCGguggGCGUGg- -3'
miRNA:   3'- -CGCCGGCUG---------UGCAUgCGGC----UGUACaa -5'
5658 5' -55.9 NC_001806.1 + 84144 0.66 0.893492
Target:  5'- cGCGG--GGCACGcACGCgCGACGUGg- -3'
miRNA:   3'- -CGCCggCUGUGCaUGCG-GCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 81358 0.69 0.780808
Target:  5'- gGCGGCCGGgGCGU-CGCCcGCGa--- -3'
miRNA:   3'- -CGCCGGCUgUGCAuGCGGcUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 79674 0.67 0.872599
Target:  5'- -gGGUCG-CGCGcGCGCCGACAc--- -3'
miRNA:   3'- cgCCGGCuGUGCaUGCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 79543 0.67 0.879785
Target:  5'- cGCGGCCGGCGCccGUGgGCCcccgcGACGa--- -3'
miRNA:   3'- -CGCCGGCUGUG--CAUgCGG-----CUGUacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.