miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 5' -55.9 NC_001806.1 + 78263 0.67 0.872599
Target:  5'- cGCGGCUGGCAgacugGCGCCGcgGCAaGUUg -3'
miRNA:   3'- -CGCCGGCUGUgca--UGCGGC--UGUaCAA- -5'
5658 5' -55.9 NC_001806.1 + 76485 0.72 0.632296
Target:  5'- cUGGCCGAUACcaaggACGCCGugGUGc- -3'
miRNA:   3'- cGCCGGCUGUGca---UGCGGCugUACaa -5'
5658 5' -55.9 NC_001806.1 + 76243 0.72 0.59149
Target:  5'- -gGGCCGACGCGcgGCGCgCGAUcgGa- -3'
miRNA:   3'- cgCCGGCUGUGCa-UGCG-GCUGuaCaa -5'
5658 5' -55.9 NC_001806.1 + 76001 1.07 0.004074
Target:  5'- cGCGGCCGACACGUACGCCGACAUGUUu -3'
miRNA:   3'- -CGCCGGCUGUGCAUGCGGCUGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 62968 0.67 0.857589
Target:  5'- aGCGGCCGGCGCGauacaugcUGCGCUuaaaGUGg- -3'
miRNA:   3'- -CGCCGGCUGUGC--------AUGCGGcug-UACaa -5'
5658 5' -55.9 NC_001806.1 + 55729 0.67 0.872599
Target:  5'- gGCGGCUGACcCGggggACcCCGAUGUGg- -3'
miRNA:   3'- -CGCCGGCUGuGCa---UGcGGCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 52522 0.7 0.733113
Target:  5'- uGCGGCuCGugGCGUcuCGCCggacGACGUGg- -3'
miRNA:   3'- -CGCCG-GCugUGCAu-GCGG----CUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 51789 0.67 0.865199
Target:  5'- cGgGGCCGugGCGgccaagUACGCCGccacCGUGg- -3'
miRNA:   3'- -CgCCGGCugUGC------AUGCGGCu---GUACaa -5'
5658 5' -55.9 NC_001806.1 + 51290 0.67 0.849776
Target:  5'- uGCGGCUGGCGCGgUGC-CUGACGc--- -3'
miRNA:   3'- -CGCCGGCUGUGC-AUGcGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 49261 0.66 0.917574
Target:  5'- gGCGGgCGACGagccgccCGUGCGCCGuCGa--- -3'
miRNA:   3'- -CGCCgGCUGU-------GCAUGCGGCuGUacaa -5'
5658 5' -55.9 NC_001806.1 + 47145 0.69 0.789984
Target:  5'- uUGGUCGACGagcUGUuuGCCGACAUGa- -3'
miRNA:   3'- cGCCGGCUGU---GCAugCGGCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 43588 0.68 0.841767
Target:  5'- gGCGGCUGACAaGUcCGCgGAUGUGc- -3'
miRNA:   3'- -CGCCGGCUGUgCAuGCGgCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 43418 0.69 0.762065
Target:  5'- uUGGCCcGCACGUaccACGCCuGCAUGg- -3'
miRNA:   3'- cGCCGGcUGUGCA---UGCGGcUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 40299 0.7 0.723275
Target:  5'- aCGGCCuGAUAUu--CGCCGGCGUGUUc -3'
miRNA:   3'- cGCCGG-CUGUGcauGCGGCUGUACAA- -5'
5658 5' -55.9 NC_001806.1 + 37484 0.67 0.879785
Target:  5'- gGCGGUCGAUGCGgcccgaggauUGCCGGCAa--- -3'
miRNA:   3'- -CGCCGGCUGUGCau--------GCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 33304 0.66 0.899364
Target:  5'- aGCGGCCGGCcgGCGcuuagggggaggaUGuCGCCGACGc--- -3'
miRNA:   3'- -CGCCGGCUG--UGC-------------AU-GCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 23051 0.66 0.900005
Target:  5'- cGUGGCCGGCggcaGCG-AgGCCGcCGUGg- -3'
miRNA:   3'- -CGCCGGCUG----UGCaUgCGGCuGUACaa -5'
5658 5' -55.9 NC_001806.1 + 21739 0.68 0.825184
Target:  5'- cGCGGCCGAcCACGcACGCgaGGCGc--- -3'
miRNA:   3'- -CGCCGGCU-GUGCaUGCGg-CUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 21307 0.73 0.561168
Target:  5'- cGCGGCgGGCACcgACGCCGGCGa--- -3'
miRNA:   3'- -CGCCGgCUGUGcaUGCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 20099 0.69 0.775238
Target:  5'- cGUGGCCGGCGcCGUcugcgggcgucggucGCGCCGGgccuuUAUGUg -3'
miRNA:   3'- -CGCCGGCUGU-GCA---------------UGCGGCU-----GUACAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.