Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5666 | 3' | -55.1 | NC_001806.1 | + | 72102 | 1.1 | 0.002555 |
Target: 5'- gCUGGAGACACAAUGCCCCGCACACACg -3' miRNA: 3'- -GACCUCUGUGUUACGGGGCGUGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 123392 | 0.83 | 0.15808 |
Target: 5'- uUGGAGGCGCGGcuaaaGUCCCGCGCGCGCu -3' miRNA: 3'- gACCUCUGUGUUa----CGGGGCGUGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 50413 | 0.76 | 0.412914 |
Target: 5'- gUGGGGGCGCGccUGCaCCCGCACguGCACc -3' miRNA: 3'- gACCUCUGUGUu-ACG-GGGCGUG--UGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 92935 | 0.76 | 0.412914 |
Target: 5'- cCUGGAGGC-CGggGCCCgCGCGCugAUg -3' miRNA: 3'- -GACCUCUGuGUuaCGGG-GCGUGugUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 91922 | 0.75 | 0.455667 |
Target: 5'- gCUGGAGACcaucaucaccaaccGCGAgGCCCUGCAUACGg -3' miRNA: 3'- -GACCUCUG--------------UGUUaCGGGGCGUGUGUg -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 5813 | 0.75 | 0.46791 |
Target: 5'- --uGAGAUACGA-GCCCCGCGCGCcCg -3' miRNA: 3'- gacCUCUGUGUUaCGGGGCGUGUGuG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 127280 | 0.74 | 0.516474 |
Target: 5'- -cGGAGGCGCc-UGCCCCGC-CACcCa -3' miRNA: 3'- gaCCUCUGUGuuACGGGGCGuGUGuG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 136927 | 0.74 | 0.526436 |
Target: 5'- -gGGGGAgCACAgcgcuuccGUGuccCCCCGCGCACGCg -3' miRNA: 3'- gaCCUCU-GUGU--------UAC---GGGGCGUGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 41805 | 0.73 | 0.556726 |
Target: 5'- -cGGAGuC-CAcgGCCCCGCAaUACGCg -3' miRNA: 3'- gaCCUCuGuGUuaCGGGGCGU-GUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 129635 | 0.73 | 0.556726 |
Target: 5'- uCUGGGGACcgagcuccuGCAGgcUGCCCUGCGCcCGCc -3' miRNA: 3'- -GACCUCUG---------UGUU--ACGGGGCGUGuGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 61750 | 0.72 | 0.59783 |
Target: 5'- -cGGAGGCGCAu--UCCCGCACcCGCg -3' miRNA: 3'- gaCCUCUGUGUuacGGGGCGUGuGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 94864 | 0.72 | 0.60819 |
Target: 5'- -aGGAGGC-CGAcGCCCUGCuggagGCGCACg -3' miRNA: 3'- gaCCUCUGuGUUaCGGGGCG-----UGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 51103 | 0.72 | 0.628955 |
Target: 5'- -aGGGGGC-CGccGCCCUGCGgGCGCa -3' miRNA: 3'- gaCCUCUGuGUuaCGGGGCGUgUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 100448 | 0.72 | 0.628955 |
Target: 5'- -cGGGGACAaggcGaCCCCGCGCugACg -3' miRNA: 3'- gaCCUCUGUguuaC-GGGGCGUGugUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 73706 | 0.72 | 0.646616 |
Target: 5'- cCUGGAGcugcagcuuCGCGcgGCCCCGCcggccaaucuguauACACGCc -3' miRNA: 3'- -GACCUCu--------GUGUuaCGGGGCG--------------UGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 142711 | 0.72 | 0.64973 |
Target: 5'- -cGGuGAagGCAAgcccCCCCGCACACACa -3' miRNA: 3'- gaCCuCUg-UGUUac--GGGGCGUGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 39212 | 0.71 | 0.691037 |
Target: 5'- uUGGGGGC-CGG-GCCCCGC-CGCAg -3' miRNA: 3'- gACCUCUGuGUUaCGGGGCGuGUGUg -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 27588 | 0.7 | 0.721517 |
Target: 5'- uUGGcGGaACACAcgGCCCCuCGCGCAUu -3' miRNA: 3'- gACC-UC-UGUGUuaCGGGGcGUGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 23603 | 0.7 | 0.721517 |
Target: 5'- cCUGGAGGCcUAcUGCUCCcCGCGCGCc -3' miRNA: 3'- -GACCUCUGuGUuACGGGGcGUGUGUG- -5' |
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5666 | 3' | -55.1 | NC_001806.1 | + | 145012 | 0.7 | 0.731532 |
Target: 5'- -cGGGGcccCACAAcgGCCCgGCGCAUGCg -3' miRNA: 3'- gaCCUCu--GUGUUa-CGGGgCGUGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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