miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 3' -55.1 NC_001806.1 + 133032 0.66 0.930363
Target:  5'- cCUGGucccGGACACGugcaacgccUGCCCUGCGCuGCGg -3'
miRNA:   3'- -GACC----UCUGUGUu--------ACGGGGCGUG-UGUg -5'
5666 3' -55.1 NC_001806.1 + 51103 0.72 0.628955
Target:  5'- -aGGGGGC-CGccGCCCUGCGgGCGCa -3'
miRNA:   3'- gaCCUCUGuGUuaCGGGGCGUgUGUG- -5'
5666 3' -55.1 NC_001806.1 + 100448 0.72 0.628955
Target:  5'- -cGGGGACAaggcGaCCCCGCGCugACg -3'
miRNA:   3'- gaCCUCUGUguuaC-GGGGCGUGugUG- -5'
5666 3' -55.1 NC_001806.1 + 73706 0.72 0.646616
Target:  5'- cCUGGAGcugcagcuuCGCGcgGCCCCGCcggccaaucuguauACACGCc -3'
miRNA:   3'- -GACCUCu--------GUGUuaCGGGGCG--------------UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 142711 0.72 0.64973
Target:  5'- -cGGuGAagGCAAgcccCCCCGCACACACa -3'
miRNA:   3'- gaCCuCUg-UGUUac--GGGGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 39212 0.71 0.691037
Target:  5'- uUGGGGGC-CGG-GCCCCGC-CGCAg -3'
miRNA:   3'- gACCUCUGuGUUaCGGGGCGuGUGUg -5'
5666 3' -55.1 NC_001806.1 + 27588 0.7 0.721517
Target:  5'- uUGGcGGaACACAcgGCCCCuCGCGCAUu -3'
miRNA:   3'- gACC-UC-UGUGUuaCGGGGcGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 23603 0.7 0.721517
Target:  5'- cCUGGAGGCcUAcUGCUCCcCGCGCGCc -3'
miRNA:   3'- -GACCUCUGuGUuACGGGGcGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 140667 0.7 0.731532
Target:  5'- uCUGGAGGCuuuuguugcuGCGcgGCgCCCGCGugcCGCGCu -3'
miRNA:   3'- -GACCUCUG----------UGUuaCG-GGGCGU---GUGUG- -5'
5666 3' -55.1 NC_001806.1 + 94864 0.72 0.60819
Target:  5'- -aGGAGGC-CGAcGCCCUGCuggagGCGCACg -3'
miRNA:   3'- gaCCUCUGuGUUaCGGGGCG-----UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 61750 0.72 0.59783
Target:  5'- -cGGAGGCGCAu--UCCCGCACcCGCg -3'
miRNA:   3'- gaCCUCUGUGUuacGGGGCGUGuGUG- -5'
5666 3' -55.1 NC_001806.1 + 129635 0.73 0.556726
Target:  5'- uCUGGGGACcgagcuccuGCAGgcUGCCCUGCGCcCGCc -3'
miRNA:   3'- -GACCUCUG---------UGUU--ACGGGGCGUGuGUG- -5'
5666 3' -55.1 NC_001806.1 + 123392 0.83 0.15808
Target:  5'- uUGGAGGCGCGGcuaaaGUCCCGCGCGCGCu -3'
miRNA:   3'- gACCUCUGUGUUa----CGGGGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 50413 0.76 0.412914
Target:  5'- gUGGGGGCGCGccUGCaCCCGCACguGCACc -3'
miRNA:   3'- gACCUCUGUGUu-ACG-GGGCGUG--UGUG- -5'
5666 3' -55.1 NC_001806.1 + 92935 0.76 0.412914
Target:  5'- cCUGGAGGC-CGggGCCCgCGCGCugAUg -3'
miRNA:   3'- -GACCUCUGuGUuaCGGG-GCGUGugUG- -5'
5666 3' -55.1 NC_001806.1 + 91922 0.75 0.455667
Target:  5'- gCUGGAGACcaucaucaccaaccGCGAgGCCCUGCAUACGg -3'
miRNA:   3'- -GACCUCUG--------------UGUUaCGGGGCGUGUGUg -5'
5666 3' -55.1 NC_001806.1 + 5813 0.75 0.46791
Target:  5'- --uGAGAUACGA-GCCCCGCGCGCcCg -3'
miRNA:   3'- gacCUCUGUGUUaCGGGGCGUGUGuG- -5'
5666 3' -55.1 NC_001806.1 + 127280 0.74 0.516474
Target:  5'- -cGGAGGCGCc-UGCCCCGC-CACcCa -3'
miRNA:   3'- gaCCUCUGUGuuACGGGGCGuGUGuG- -5'
5666 3' -55.1 NC_001806.1 + 136927 0.74 0.526436
Target:  5'- -gGGGGAgCACAgcgcuuccGUGuccCCCCGCGCACGCg -3'
miRNA:   3'- gaCCUCU-GUGU--------UAC---GGGGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 41805 0.73 0.556726
Target:  5'- -cGGAGuC-CAcgGCCCCGCAaUACGCg -3'
miRNA:   3'- gaCCUCuGuGUuaCGGGGCGU-GUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.