miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 3' -55.1 NC_001806.1 + 1607 0.68 0.857349
Target:  5'- -cGGGccgcagcGGCGCGcccagGCCCCaGCGCGCGCa -3'
miRNA:   3'- gaCCU-------CUGUGUua---CGGGG-CGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 2515 0.68 0.83374
Target:  5'- cCUGGGcGGCGgGGgcggGCCCgGCGCAcCGCg -3'
miRNA:   3'- -GACCU-CUGUgUUa---CGGGgCGUGU-GUG- -5'
5666 3' -55.1 NC_001806.1 + 3115 0.67 0.865852
Target:  5'- -cGGcAGGCGCGG-GUCCCGCGgcaGCGCg -3'
miRNA:   3'- gaCC-UCUGUGUUaCGGGGCGUg--UGUG- -5'
5666 3' -55.1 NC_001806.1 + 3860 0.68 0.825221
Target:  5'- -aGGuGGgGCAcgGCCCgCGC-CACGCu -3'
miRNA:   3'- gaCCuCUgUGUuaCGGG-GCGuGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 5813 0.75 0.46791
Target:  5'- --uGAGAUACGA-GCCCCGCGCGCcCg -3'
miRNA:   3'- gacCUCUGUGUUaCGGGGCGUGUGuG- -5'
5666 3' -55.1 NC_001806.1 + 10401 0.68 0.816521
Target:  5'- -gGGAGGCGgGAgccgggggGUCCCGCugGCGg -3'
miRNA:   3'- gaCCUCUGUgUUa-------CGGGGCGugUGUg -5'
5666 3' -55.1 NC_001806.1 + 21521 0.68 0.816521
Target:  5'- -cGGGGcCGCGAacgggagGCCCCGC-UACGCg -3'
miRNA:   3'- gaCCUCuGUGUUa------CGGGGCGuGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 22568 0.68 0.858133
Target:  5'- -cGGGGGcCGCGGggaGCCCCGgCGCcgGCGCa -3'
miRNA:   3'- gaCCUCU-GUGUUa--CGGGGC-GUG--UGUG- -5'
5666 3' -55.1 NC_001806.1 + 22922 0.67 0.885595
Target:  5'- -cGGAGGgaccCGCGG-GCCCCGCuuccccgccgcgccGCACGCc -3'
miRNA:   3'- gaCCUCU----GUGUUaCGGGGCG--------------UGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 23603 0.7 0.721517
Target:  5'- cCUGGAGGCcUAcUGCUCCcCGCGCGCc -3'
miRNA:   3'- -GACCUCUGuGUuACGGGGcGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 24360 0.68 0.84207
Target:  5'- -cGGGGgucuucgcGCGCGuggagGCCgCGCACGCGCg -3'
miRNA:   3'- gaCCUC--------UGUGUua---CGGgGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 27189 0.68 0.816521
Target:  5'- -cGGAGAgACGAUGgCaggagCCGCGCAUAUa -3'
miRNA:   3'- gaCCUCUgUGUUACgG-----GGCGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 27588 0.7 0.721517
Target:  5'- uUGGcGGaACACAcgGCCCCuCGCGCAUu -3'
miRNA:   3'- gACC-UC-UGUGUuaCGGGGcGUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 29533 0.66 0.907432
Target:  5'- -gGGGGGCACAcggugaggGCCCUGuCGCcCACc -3'
miRNA:   3'- gaCCUCUGUGUua------CGGGGC-GUGuGUG- -5'
5666 3' -55.1 NC_001806.1 + 30296 0.67 0.887686
Target:  5'- -cGGAGccggcCGCcc-GCCCCGCGgACGCg -3'
miRNA:   3'- gaCCUCu----GUGuuaCGGGGCGUgUGUG- -5'
5666 3' -55.1 NC_001806.1 + 33373 0.66 0.919389
Target:  5'- -cGGAGAgcCGcgGCaCCCGgACGCGCc -3'
miRNA:   3'- gaCCUCUguGUuaCG-GGGCgUGUGUG- -5'
5666 3' -55.1 NC_001806.1 + 33536 0.69 0.789419
Target:  5'- aUGGAuuuccgGGCGCGGUGCCCCugucuGCAgaGCACu -3'
miRNA:   3'- gACCU------CUGUGUUACGGGG-----CGUg-UGUG- -5'
5666 3' -55.1 NC_001806.1 + 36997 0.66 0.929838
Target:  5'- -gGGGGGCgACGAUGUgacuggccgucaaCUCGCAgACACg -3'
miRNA:   3'- gaCCUCUG-UGUUACG-------------GGGCGUgUGUG- -5'
5666 3' -55.1 NC_001806.1 + 39212 0.71 0.691037
Target:  5'- uUGGGGGC-CGG-GCCCCGC-CGCAg -3'
miRNA:   3'- gACCUCUGuGUUaCGGGGCGuGUGUg -5'
5666 3' -55.1 NC_001806.1 + 41377 0.67 0.894505
Target:  5'- -aGGGGGCaucACGggGCCCUGgGCGCGg -3'
miRNA:   3'- gaCCUCUG---UGUuaCGGGGCgUGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.