miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 95399 0.73 0.415653
Target:  5'- cGGGGGCGGGGGCgaggacgaagaccGUCGCCGcGGGcCCg -3'
miRNA:   3'- -UCUCUGUCCUUG-------------CGGCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 95024 0.66 0.84716
Target:  5'- cGAGuugcaGCAGGAGacCGCCGCgGUGG--CCg -3'
miRNA:   3'- uCUC-----UGUCCUU--GCGGCGgCACCcaGG- -5'
5692 5' -58.4 NC_001806.1 + 90840 0.69 0.654262
Target:  5'- cGAGGCGgucguGGGAccCGCCGCCGUGGcaCUg -3'
miRNA:   3'- uCUCUGU-----CCUU--GCGGCGGCACCcaGG- -5'
5692 5' -58.4 NC_001806.1 + 89894 0.7 0.59441
Target:  5'- ---cGCAGGGACcccgcguugccgGCCGCCG-GGGUUCa -3'
miRNA:   3'- ucucUGUCCUUG------------CGGCGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 84437 0.67 0.770337
Target:  5'- cGGGGACGGGGGCcgguuugugaGCCugcuucggGCCGcgGGGcCCg -3'
miRNA:   3'- -UCUCUGUCCUUG----------CGG--------CGGCa-CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 84070 0.67 0.797292
Target:  5'- gGGAGuCGGGGccccagcugcGCGCUGCCGcgGaGGcCCg -3'
miRNA:   3'- -UCUCuGUCCU----------UGCGGCGGCa-C-CCaGG- -5'
5692 5' -58.4 NC_001806.1 + 83921 0.69 0.6682
Target:  5'- cGGGGGCGGGGacagcugcuguacucGCGCCGCCGcucgcaacgGGGaaUUCg -3'
miRNA:   3'- -UCUCUGUCCU---------------UGCGGCGGCa--------CCC--AGG- -5'
5692 5' -58.4 NC_001806.1 + 76066 0.67 0.797292
Target:  5'- --uGGCGGGGGgGCUGCUGgagcGGGcCCa -3'
miRNA:   3'- ucuCUGUCCUUgCGGCGGCa---CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 75977 0.66 0.806003
Target:  5'- --cGACuGGAGCGCgGCCuucgGGG-CCg -3'
miRNA:   3'- ucuCUGuCCUUGCGgCGGca--CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 75209 0.66 0.822969
Target:  5'- --cGACGGuGGAUGCgGCCGUGcGGgcgcaCCg -3'
miRNA:   3'- ucuCUGUC-CUUGCGgCGGCAC-CCa----GG- -5'
5692 5' -58.4 NC_001806.1 + 74475 0.66 0.84716
Target:  5'- ---aACAGGcGCGCCGCagcucGGGUCUg -3'
miRNA:   3'- ucucUGUCCuUGCGGCGgca--CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 72504 0.67 0.77945
Target:  5'- cGAGAUcgcgggccuggGGGAgcccuGCGUCGgCGUGGGcCCc -3'
miRNA:   3'- uCUCUG-----------UCCU-----UGCGGCgGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 71641 0.68 0.720281
Target:  5'- cGGGGGCAuGGGugGCgGaaacaacacuaaccCCGgGGGUCCg -3'
miRNA:   3'- -UCUCUGU-CCUugCGgC--------------GGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 69719 0.66 0.806003
Target:  5'- uGAGACGGccGAGCGCCGCUuuaGUuccGGUCa -3'
miRNA:   3'- uCUCUGUC--CUUGCGGCGG---CAc--CCAGg -5'
5692 5' -58.4 NC_001806.1 + 67963 0.67 0.77945
Target:  5'- aAGAcGCGGGGuacucgcaACGCCuGCgG-GGGUCCu -3'
miRNA:   3'- -UCUcUGUCCU--------UGCGG-CGgCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 66833 0.66 0.806003
Target:  5'- gGGuGGCcGGuguGCGCCGCCuccugGGGcCCg -3'
miRNA:   3'- -UCuCUGuCCu--UGCGGCGGca---CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 65784 0.67 0.770337
Target:  5'- cGAGA-GGGGACGUCGgC--GGGUCCg -3'
miRNA:   3'- uCUCUgUCCUUGCGGCgGcaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 65445 0.73 0.460468
Target:  5'- gGGAGcgGGGGAUGCCGCgGcccccGGGUCCu -3'
miRNA:   3'- -UCUCugUCCUUGCGGCGgCa----CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 64945 0.69 0.664222
Target:  5'- gAGGGACcaccGGcgucGGCGCCcggGCCGgGGGUCCc -3'
miRNA:   3'- -UCUCUGu---CC----UUGCGG---CGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 64809 0.71 0.532583
Target:  5'- gGGGGACGGGGuaggccgUGCCcguucccagacgugGCCGgGGGUCCg -3'
miRNA:   3'- -UCUCUGUCCUu------GCGG--------------CGGCaCCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.