miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 3' -57.9 NC_001806.1 + 57615 1.07 0.002549
Target:  5'- gCCCCGCCCCGUCAGGGGAAUCCAAAAc -3'
miRNA:   3'- -GGGGCGGGGCAGUCCCCUUAGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 47198 0.78 0.222584
Target:  5'- cCCCCGCCCgGcCGGGGGuc-CCAAAAa -3'
miRNA:   3'- -GGGGCGGGgCaGUCCCCuuaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 33350 0.78 0.239232
Target:  5'- -gCCGCCCCGgcugCAGGGGGGcCCGGAGa -3'
miRNA:   3'- ggGGCGGGGCa---GUCCCCUUaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 73984 0.76 0.317059
Target:  5'- gCCCGCCCCGgccggggcggccccgCAGGGGGcUCCGc-- -3'
miRNA:   3'- gGGGCGGGGCa--------------GUCCCCUuAGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 37947 0.75 0.330883
Target:  5'- aCCCCGCCCCG--GGGcGGggUCCc--- -3'
miRNA:   3'- -GGGGCGGGGCagUCC-CCuuAGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 4174 0.74 0.385575
Target:  5'- aCCCGCCCCGggggCGGGGGcccggcgCCGGGc -3'
miRNA:   3'- gGGGCGGGGCa---GUCCCCuua----GGUUUu -5'
5695 3' -57.9 NC_001806.1 + 742 0.74 0.40226
Target:  5'- uCCCgCGCUCCcUCGGGGGggUUCGGGc -3'
miRNA:   3'- -GGG-GCGGGGcAGUCCCCuuAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 147284 0.74 0.410774
Target:  5'- -gCCGCCgaggaCGUCAGGGGggUCCc--- -3'
miRNA:   3'- ggGGCGGg----GCAGUCCCCuuAGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 119307 0.74 0.410774
Target:  5'- aCCCGCCCauCGUC-GGGGcGUCCGAc- -3'
miRNA:   3'- gGGGCGGG--GCAGuCCCCuUAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 16358 0.73 0.419398
Target:  5'- aCCCCGCcuucacgauuaCCCGUUGGGGGuAAUCUGGAu -3'
miRNA:   3'- -GGGGCG-----------GGGCAGUCCCC-UUAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 150721 0.73 0.419398
Target:  5'- gCCCGCCCUGUgAGGGcGGGcuggcUCCAAGc -3'
miRNA:   3'- gGGGCGGGGCAgUCCC-CUU-----AGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 112923 0.73 0.428131
Target:  5'- uUCCCGCCCCGccagcuguuuuuUUGGGGGAAggaccgCCAGGu -3'
miRNA:   3'- -GGGGCGGGGC------------AGUCCCCUUa-----GGUUUu -5'
5695 3' -57.9 NC_001806.1 + 44731 0.72 0.482669
Target:  5'- uCCCgGCCCCGguuggaGGGGGGGgcgCCAGu- -3'
miRNA:   3'- -GGGgCGGGGCag----UCCCCUUa--GGUUuu -5'
5695 3' -57.9 NC_001806.1 + 52951 0.72 0.492087
Target:  5'- aCCCGCCCCGg-AGGGaGAAcCCGAc- -3'
miRNA:   3'- gGGGCGGGGCagUCCC-CUUaGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 68786 0.72 0.501588
Target:  5'- uCCCCGCCCCGUUcgugcaAGaGGGccUCCGGu- -3'
miRNA:   3'- -GGGGCGGGGCAG------UC-CCCuuAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 33174 0.72 0.520825
Target:  5'- cCUUCGCCCCGUgAGGGGAcagaCGAAc -3'
miRNA:   3'- -GGGGCGGGGCAgUCCCCUuag-GUUUu -5'
5695 3' -57.9 NC_001806.1 + 20298 0.72 0.520825
Target:  5'- gCCCCGCCCCcUUGGGGcGGUCCc--- -3'
miRNA:   3'- -GGGGCGGGGcAGUCCCcUUAGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 113310 0.71 0.570058
Target:  5'- cCCCCGgCCgGccCGGGGGAgAUCCAGGc -3'
miRNA:   3'- -GGGGCgGGgCa-GUCCCCU-UAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 103196 0.7 0.590091
Target:  5'- gCUCCGCCgCCGUCucccGGGGGAggUUAAAGa -3'
miRNA:   3'- -GGGGCGG-GGCAG----UCCCCUuaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 115750 0.7 0.590091
Target:  5'- gCCCCGCCCU-UCcuuGGGGAGUgCGAu- -3'
miRNA:   3'- -GGGGCGGGGcAGu--CCCCUUAgGUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.