Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5695 | 3' | -57.9 | NC_001806.1 | + | 50876 | 0.66 | 0.846424 |
Target: 5'- cCCCCGCCaaGUUcuGGGcGGAcUCCGc-- -3' miRNA: 3'- -GGGGCGGggCAG--UCC-CCUuAGGUuuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 44731 | 0.72 | 0.482669 |
Target: 5'- uCCCgGCCCCGguuggaGGGGGGGgcgCCAGu- -3' miRNA: 3'- -GGGgCGGGGCag----UCCCCUUa--GGUUuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 52951 | 0.72 | 0.492087 |
Target: 5'- aCCCGCCCCGg-AGGGaGAAcCCGAc- -3' miRNA: 3'- gGGGCGGGGCagUCCC-CUUaGGUUuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 68786 | 0.72 | 0.501588 |
Target: 5'- uCCCCGCCCCGUUcgugcaAGaGGGccUCCGGu- -3' miRNA: 3'- -GGGGCGGGGCAG------UC-CCCuuAGGUUuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 20298 | 0.72 | 0.520825 |
Target: 5'- gCCCCGCCCCcUUGGGGcGGUCCc--- -3' miRNA: 3'- -GGGGCGGGGcAGUCCCcUUAGGuuuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 33174 | 0.72 | 0.520825 |
Target: 5'- cCUUCGCCCCGUgAGGGGAcagaCGAAc -3' miRNA: 3'- -GGGGCGGGGCAgUCCCCUuag-GUUUu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 113310 | 0.71 | 0.570058 |
Target: 5'- cCCCCGgCCgGccCGGGGGAgAUCCAGGc -3' miRNA: 3'- -GGGGCgGGgCa-GUCCCCU-UAGGUUUu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 103196 | 0.7 | 0.590091 |
Target: 5'- gCUCCGCCgCCGUCucccGGGGGAggUUAAAGa -3' miRNA: 3'- -GGGGCGG-GGCAG----UCCCCUuaGGUUUU- -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 115750 | 0.7 | 0.590091 |
Target: 5'- gCCCCGCCCU-UCcuuGGGGAGUgCGAu- -3' miRNA: 3'- -GGGGCGGGGcAGu--CCCCUUAgGUUuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 112923 | 0.73 | 0.428131 |
Target: 5'- uUCCCGCCCCGccagcuguuuuuUUGGGGGAAggaccgCCAGGu -3' miRNA: 3'- -GGGGCGGGGC------------AGUCCCCUUa-----GGUUUu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 16358 | 0.73 | 0.419398 |
Target: 5'- aCCCCGCcuucacgauuaCCCGUUGGGGGuAAUCUGGAu -3' miRNA: 3'- -GGGGCG-----------GGGCAGUCCCC-UUAGGUUUu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 150721 | 0.73 | 0.419398 |
Target: 5'- gCCCGCCCUGUgAGGGcGGGcuggcUCCAAGc -3' miRNA: 3'- gGGGCGGGGCAgUCCC-CUU-----AGGUUUu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 47198 | 0.78 | 0.222584 |
Target: 5'- cCCCCGCCCgGcCGGGGGuc-CCAAAAa -3' miRNA: 3'- -GGGGCGGGgCaGUCCCCuuaGGUUUU- -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 33350 | 0.78 | 0.239232 |
Target: 5'- -gCCGCCCCGgcugCAGGGGGGcCCGGAGa -3' miRNA: 3'- ggGGCGGGGCa---GUCCCCUUaGGUUUU- -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 73984 | 0.76 | 0.317059 |
Target: 5'- gCCCGCCCCGgccggggcggccccgCAGGGGGcUCCGc-- -3' miRNA: 3'- gGGGCGGGGCa--------------GUCCCCUuAGGUuuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 37947 | 0.75 | 0.330883 |
Target: 5'- aCCCCGCCCCG--GGGcGGggUCCc--- -3' miRNA: 3'- -GGGGCGGGGCagUCC-CCuuAGGuuuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 4174 | 0.74 | 0.385575 |
Target: 5'- aCCCGCCCCGggggCGGGGGcccggcgCCGGGc -3' miRNA: 3'- gGGGCGGGGCa---GUCCCCuua----GGUUUu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 742 | 0.74 | 0.40226 |
Target: 5'- uCCCgCGCUCCcUCGGGGGggUUCGGGc -3' miRNA: 3'- -GGG-GCGGGGcAGUCCCCuuAGGUUUu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 147284 | 0.74 | 0.410774 |
Target: 5'- -gCCGCCgaggaCGUCAGGGGggUCCc--- -3' miRNA: 3'- ggGGCGGg----GCAGUCCCCuuAGGuuuu -5' |
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5695 | 3' | -57.9 | NC_001806.1 | + | 119307 | 0.74 | 0.410774 |
Target: 5'- aCCCGCCCauCGUC-GGGGcGUCCGAc- -3' miRNA: 3'- gGGGCGGG--GCAGuCCCCuUAGGUUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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