miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 3' -57.9 NC_001806.1 + 742 0.74 0.40226
Target:  5'- uCCCgCGCUCCcUCGGGGGggUUCGGGc -3'
miRNA:   3'- -GGG-GCGGGGcAGUCCCCuuAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 1239 0.66 0.821867
Target:  5'- gCCCCGCCCCGUCccGGc---CCGu-- -3'
miRNA:   3'- -GGGGCGGGGCAGucCCcuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 2174 0.68 0.720563
Target:  5'- gCCCagCGCCgacaCGUCGGGGGcgccGGUCCAAu- -3'
miRNA:   3'- -GGG--GCGGg---GCAGUCCCC----UUAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 4174 0.74 0.385575
Target:  5'- aCCCGCCCCGggggCGGGGGcccggcgCCGGGc -3'
miRNA:   3'- gGGGCGGGGCa---GUCCCCuua----GGUUUu -5'
5695 3' -57.9 NC_001806.1 + 4792 0.67 0.777681
Target:  5'- uCCCCGUCaucguCGUCGGcucgaaaggcGGGggUCCGGGg -3'
miRNA:   3'- -GGGGCGGg----GCAGUC----------CCCuuAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 5526 0.66 0.838419
Target:  5'- cCCCCGCCCCccCGGcGGGcccaccCCGAAc -3'
miRNA:   3'- -GGGGCGGGGcaGUC-CCCuua---GGUUUu -5'
5695 3' -57.9 NC_001806.1 + 5575 0.67 0.757169
Target:  5'- aCCCCGCCCCGacgccggcacgcCGGGGGc--CCGu-- -3'
miRNA:   3'- -GGGGCGGGGCa-----------GUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 7787 0.69 0.690883
Target:  5'- cCCCCGcCCCCGgcuaCAGGGG---CCAu-- -3'
miRNA:   3'- -GGGGC-GGGGCa---GUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 12621 0.66 0.846424
Target:  5'- cCCCCGCaCCCauuaAGGGGGgguAUCUAGu- -3'
miRNA:   3'- -GGGGCG-GGGcag-UCCCCU---UAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 16358 0.73 0.419398
Target:  5'- aCCCCGCcuucacgauuaCCCGUUGGGGGuAAUCUGGAu -3'
miRNA:   3'- -GGGGCG-----------GGGCAGUCCCC-UUAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 20298 0.72 0.520825
Target:  5'- gCCCCGCCCCcUUGGGGcGGUCCc--- -3'
miRNA:   3'- -GGGGCGGGGcAGUCCCcUUAGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 22072 0.66 0.838419
Target:  5'- cCCCCGCCCC--CGGGGcGggUgCu--- -3'
miRNA:   3'- -GGGGCGGGGcaGUCCC-CuuAgGuuuu -5'
5695 3' -57.9 NC_001806.1 + 28438 0.68 0.73032
Target:  5'- -gUCGCCCUGUUGGGGGucgCCAu-- -3'
miRNA:   3'- ggGGCGGGGCAGUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 30274 0.68 0.73032
Target:  5'- cCCCgCGCCCCGgccccCGGGGcGGAgCCGGc- -3'
miRNA:   3'- -GGG-GCGGGGCa----GUCCC-CUUaGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 30584 0.68 0.73032
Target:  5'- cCCUCGCgCCGgCAGGGG---CCAAGAg -3'
miRNA:   3'- -GGGGCGgGGCaGUCCCCuuaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 30727 0.66 0.821867
Target:  5'- gCCCCGacCCCCG-CGGGGGccgCCu--- -3'
miRNA:   3'- -GGGGC--GGGGCaGUCCCCuuaGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 30946 0.66 0.838419
Target:  5'- aCCUGCCCaucUCGGGGGucUCUAGc- -3'
miRNA:   3'- gGGGCGGGgc-AGUCCCCuuAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 33174 0.72 0.520825
Target:  5'- cCUUCGCCCCGUgAGGGGAcagaCGAAc -3'
miRNA:   3'- -GGGGCGGGGCAgUCCCCUuag-GUUUu -5'
5695 3' -57.9 NC_001806.1 + 33350 0.78 0.239232
Target:  5'- -gCCGCCCCGgcugCAGGGGGGcCCGGAGa -3'
miRNA:   3'- ggGGCGGGGCa---GUCCCCUUaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 37909 0.67 0.768428
Target:  5'- gCCaCGCCUCGcCAuGGGGGcgCCGGGg -3'
miRNA:   3'- gGG-GCGGGGCaGU-CCCCUuaGGUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.