Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5697 | 3' | -55.2 | NC_001806.1 | + | 83034 | 0.68 | 0.846796 |
Target: 5'- -------cGGGGUCCUGGcgAGCGUCGCg -3' miRNA: 3'- cucuucuuCUCCGGGGCU--UCGCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 93409 | 0.68 | 0.862457 |
Target: 5'- cGAGGAGAugauGGAGcugaccgcgcguGCCCUGGAGCG-CGg -3' miRNA: 3'- -CUCUUCU----UCUC------------CGGGGCUUCGCaGCg -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 117685 | 0.68 | 0.869975 |
Target: 5'- aGAGAAGcucGGGgCCCGAGcccGCGUCGg -3' miRNA: 3'- -CUCUUCuucUCCgGGGCUU---CGCAGCg -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 6569 | 0.68 | 0.869975 |
Target: 5'- cGGAGGAGGGGGCUCacccGCGUuCGUg -3' miRNA: 3'- cUCUUCUUCUCCGGGgcuuCGCA-GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 10397 | 0.68 | 0.869975 |
Target: 5'- cGGGggGAggcgggagccgGGGGGUCCCGcuGGCGggagUGCc -3' miRNA: 3'- -CUCuuCU-----------UCUCCGGGGCu-UCGCa---GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 11834 | 0.67 | 0.876559 |
Target: 5'- cGAGggGGuGGAGGCCUgguuaGggGCGgguugguauacgcUCGCc -3' miRNA: 3'- -CUCuuCU-UCUCCGGGg----CuuCGC-------------AGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 30875 | 0.67 | 0.877279 |
Target: 5'- -cGAGGAAGuGuGCCCgGAAGaCG-CGCc -3' miRNA: 3'- cuCUUCUUCuC-CGGGgCUUC-GCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 4304 | 0.67 | 0.884362 |
Target: 5'- ----uGAAGcGGCCCgu-GGCGUCGCg -3' miRNA: 3'- cucuuCUUCuCCGGGgcuUCGCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 96428 | 0.67 | 0.89122 |
Target: 5'- gGGGuuGAcgcuGGGGGUCCUGGuGGCGUCGg -3' miRNA: 3'- -CUCuuCU----UCUCCGGGGCU-UCGCAGCg -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 95261 | 0.67 | 0.89122 |
Target: 5'- -cGAcGAGGAGGCgCU---GCGUCGCg -3' miRNA: 3'- cuCUuCUUCUCCGgGGcuuCGCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 2724 | 0.67 | 0.897848 |
Target: 5'- aGGggGucGGGGCCCuCGGcgGGCcggCGCg -3' miRNA: 3'- cUCuuCuuCUCCGGG-GCU--UCGca-GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 41829 | 0.67 | 0.897848 |
Target: 5'- cGGggGcGGgcgucaGGGCCCCGGGcGCGUaCGUg -3' miRNA: 3'- cUCuuCuUC------UCCGGGGCUU-CGCA-GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 151073 | 0.67 | 0.897848 |
Target: 5'- cGGggGucgcGGGGGUCgCGggG-GUCGCg -3' miRNA: 3'- cUCuuCu---UCUCCGGgGCuuCgCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 38198 | 0.67 | 0.900434 |
Target: 5'- -uGAGGAucguuGGGGCCCugccgcuccgucggaCGAGGCGUCu- -3' miRNA: 3'- cuCUUCUu----CUCCGGG---------------GCUUCGCAGcg -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 65635 | 0.67 | 0.903614 |
Target: 5'- uGGGcGAGAGG-GGCCCCGGcggccucccccugGGUGgcugCGCu -3' miRNA: 3'- -CUC-UUCUUCuCCGGGGCU-------------UCGCa---GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 59487 | 0.67 | 0.904243 |
Target: 5'- aGAGAcAGGcucGGGuGUCCCGGAcCGUCGCa -3' miRNA: 3'- -CUCU-UCUu--CUC-CGGGGCUUcGCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 140444 | 0.67 | 0.904243 |
Target: 5'- uGGGggGggGGcgguuacucGGcCCCCGAGGCca-GCa -3' miRNA: 3'- -CUCuuCuuCU---------CC-GGGGCUUCGcagCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 83811 | 0.67 | 0.906735 |
Target: 5'- -cGAGGAGGGGGCggggucggcgcgggaUCCGGcacgcAGCcGUCGCu -3' miRNA: 3'- cuCUUCUUCUCCG---------------GGGCU-----UCG-CAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 2811 | 0.67 | 0.909797 |
Target: 5'- uGGGcGGggGcgggcucGGGCCCCGggGgCGUggaggggggCGCg -3' miRNA: 3'- -CUCuUCuuC-------UCCGGGGCuuC-GCA---------GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 144614 | 0.67 | 0.910402 |
Target: 5'- cAGccGggGcGGCCaaGggGCGUCGg -3' miRNA: 3'- cUCuuCuuCuCCGGggCuuCGCAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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