miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5698 5' -48.7 NC_001806.1 + 67173 0.66 0.998102
Target:  5'- ------cAUCAGcuggccccaggccUCGCCCaGCCGCUCg -3'
miRNA:   3'- uuuuauaUAGUU-------------AGCGGGcUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 116916 0.66 0.998455
Target:  5'- -------cUC-GUCGCCUGGCUGaCCCa -3'
miRNA:   3'- uuuuauauAGuUAGCGGGCUGGC-GGG- -5'
5698 5' -48.7 NC_001806.1 + 152051 0.66 0.998455
Target:  5'- ------------cCGCCCGgaccGCCGCCCg -3'
miRNA:   3'- uuuuauauaguuaGCGGGC----UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 146583 0.66 0.998455
Target:  5'- --------cCAG-CGCCCGACCcCCCc -3'
miRNA:   3'- uuuuauauaGUUaGCGGGCUGGcGGG- -5'
5698 5' -48.7 NC_001806.1 + 147016 0.66 0.998956
Target:  5'- cGAGAUGgg-CAGguagcgCGUgaGGCCGCCCg -3'
miRNA:   3'- -UUUUAUauaGUUa-----GCGggCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 26410 0.66 0.998726
Target:  5'- ------------cCGCCCccGGCCGCCCg -3'
miRNA:   3'- uuuuauauaguuaGCGGG--CUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 27363 0.66 0.998455
Target:  5'- --------cCAAUgGgCCgGGCCGCCCa -3'
miRNA:   3'- uuuuauauaGUUAgC-GGgCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 116000 0.66 0.998455
Target:  5'- ------gGUUggUCGCCCGucucugcuacGCCGCUg -3'
miRNA:   3'- uuuuauaUAGuuAGCGGGC----------UGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 54467 0.66 0.998102
Target:  5'- -------cUCGAUCGCCuCGaucaccuGCCGCUCg -3'
miRNA:   3'- uuuuauauAGUUAGCGG-GC-------UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 43786 0.66 0.998726
Target:  5'- gGAGGUuacgCuggCGCCUG-CCGCCCg -3'
miRNA:   3'- -UUUUAuauaGuuaGCGGGCuGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 20471 0.66 0.998956
Target:  5'- ------aGUCGGg-GCCCGGgccCCGCCCc -3'
miRNA:   3'- uuuuauaUAGUUagCGGGCU---GGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 89566 0.66 0.998455
Target:  5'- -------uUCGcGUCgGCCCGGCCGgCCg -3'
miRNA:   3'- uuuuauauAGU-UAG-CGGGCUGGCgGG- -5'
5698 5' -48.7 NC_001806.1 + 102479 0.66 0.999149
Target:  5'- -cGGUAg--CGGUacugUGgCCGGCCGCCCu -3'
miRNA:   3'- uuUUAUauaGUUA----GCgGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 51861 0.66 0.998956
Target:  5'- ----cAUGUUcuuuaugCGCCCGgcggacccaaGCCGCCCa -3'
miRNA:   3'- uuuuaUAUAGuua----GCGGGC----------UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 136513 0.66 0.998823
Target:  5'- -cGAUAUAUUuggggaagcuugacgGGcCGCUCgGGCCGCCCg -3'
miRNA:   3'- uuUUAUAUAG---------------UUaGCGGG-CUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 117931 0.66 0.998726
Target:  5'- gAAGAUGauaUAAUCGUCgCGguACCGCCCg -3'
miRNA:   3'- -UUUUAUauaGUUAGCGG-GC--UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 61257 0.66 0.998956
Target:  5'- ---------aGAUCGUugaCGACCGCCCc -3'
miRNA:   3'- uuuuauauagUUAGCGg--GCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 5902 0.66 0.998956
Target:  5'- --------cCAAgggcCGCCCGccuuGCCGCCCc -3'
miRNA:   3'- uuuuauauaGUUa---GCGGGC----UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 119317 0.66 0.998455
Target:  5'- ------cGUCGGggCGUCCGACCcCCCc -3'
miRNA:   3'- uuuuauaUAGUUa-GCGGGCUGGcGGG- -5'
5698 5' -48.7 NC_001806.1 + 76942 0.66 0.998956
Target:  5'- cGAGGUAUGg-GGUCGCuUCGGCCGCg- -3'
miRNA:   3'- -UUUUAUAUagUUAGCG-GGCUGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.