miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5698 5' -48.7 NC_001806.1 + 341 0.66 0.998455
Target:  5'- ------------cCGCCCGgaccGCCGCCCg -3'
miRNA:   3'- uuuuauauaguuaGCGGGC----UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 1700 0.74 0.882793
Target:  5'- ------cGUCGGUgguccccgaggccgcCGCCCGGCCGUCCa -3'
miRNA:   3'- uuuuauaUAGUUA---------------GCGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 4151 0.68 0.994852
Target:  5'- ----------uGUCGCCCaGGCCGCCg -3'
miRNA:   3'- uuuuauauaguUAGCGGG-CUGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 4488 0.7 0.980306
Target:  5'- ------------cCGCCCGACgGCCCg -3'
miRNA:   3'- uuuuauauaguuaGCGGGCUGgCGGG- -5'
5698 5' -48.7 NC_001806.1 + 5902 0.66 0.998956
Target:  5'- --------cCAAgggcCGCCCGccuuGCCGCCCc -3'
miRNA:   3'- uuuuauauaGUUa---GCGGGC----UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 7232 0.67 0.997764
Target:  5'- ------cAUCugaagcCGUCCGACCGCCa -3'
miRNA:   3'- uuuuauaUAGuua---GCGGGCUGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 8684 0.69 0.987934
Target:  5'- ------cAUCAGgagCGCCCcaaauCCGCCCg -3'
miRNA:   3'- uuuuauaUAGUUa--GCGGGcu---GGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 11345 0.69 0.989423
Target:  5'- ------cGUCGGaaGCCCaGCCGCCCc -3'
miRNA:   3'- uuuuauaUAGUUagCGGGcUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 13634 0.7 0.980306
Target:  5'- uGGAUGUGguaCAcgCGCCgGACC-CCCg -3'
miRNA:   3'- uUUUAUAUa--GUuaGCGGgCUGGcGGG- -5'
5698 5' -48.7 NC_001806.1 + 14826 0.73 0.907732
Target:  5'- uAGGGUGUGUgcGUCGCCCGcgucuggaccaACCGCCa -3'
miRNA:   3'- -UUUUAUAUAguUAGCGGGC-----------UGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 20471 0.66 0.998956
Target:  5'- ------aGUCGGg-GCCCGGgccCCGCCCc -3'
miRNA:   3'- uuuuauaUAGUUagCGGGCU---GGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 21578 0.68 0.993046
Target:  5'- -----cUGUCGccgCGCCCGcCgGCCCa -3'
miRNA:   3'- uuuuauAUAGUua-GCGGGCuGgCGGG- -5'
5698 5' -48.7 NC_001806.1 + 22806 0.75 0.85629
Target:  5'- ------cGUCGAgUGCCUGGCCGCCUg -3'
miRNA:   3'- uuuuauaUAGUUaGCGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 23312 0.72 0.93146
Target:  5'- -------------gGCCCGGCCGCCCg -3'
miRNA:   3'- uuuuauauaguuagCGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 26410 0.66 0.998726
Target:  5'- ------------cCGCCCccGGCCGCCCg -3'
miRNA:   3'- uuuuauauaguuaGCGGG--CUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 26491 0.75 0.830727
Target:  5'- ------gGUCAGgagcgCGCCCGcgGCCGCCCc -3'
miRNA:   3'- uuuuauaUAGUUa----GCGGGC--UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 26944 0.72 0.93146
Target:  5'- ----gGUGUCugg-GCCuCGGCCGCCCg -3'
miRNA:   3'- uuuuaUAUAGuuagCGG-GCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 27363 0.66 0.998455
Target:  5'- --------cCAAUgGgCCgGGCCGCCCa -3'
miRNA:   3'- uuuuauauaGUUAgC-GGgCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 27452 0.68 0.994004
Target:  5'- ------cAUUAAUgGgcggcCCCGGCCGCCCu -3'
miRNA:   3'- uuuuauaUAGUUAgC-----GGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 31854 0.69 0.986287
Target:  5'- ----gGUGUUAAguuuccgcgagCGCCUGcCCGCCCg -3'
miRNA:   3'- uuuuaUAUAGUUa----------GCGGGCuGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.