miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5698 5' -48.7 NC_001806.1 + 102479 0.66 0.999149
Target:  5'- -cGGUAg--CGGUacugUGgCCGGCCGCCCu -3'
miRNA:   3'- uuUUAUauaGUUA----GCgGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 23312 0.72 0.93146
Target:  5'- -------------gGCCCGGCCGCCCg -3'
miRNA:   3'- uuuuauauaguuagCGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 26944 0.72 0.93146
Target:  5'- ----gGUGUCugg-GCCuCGGCCGCCCg -3'
miRNA:   3'- uuuuaUAUAGuuagCGG-GCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 58248 0.72 0.946463
Target:  5'- --------gCAGUCGCCgGAgcaCCGCCCg -3'
miRNA:   3'- uuuuauauaGUUAGCGGgCU---GGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 103107 0.72 0.946463
Target:  5'- ----gAUAUCGAcggggaGCUCGGCCGCCUg -3'
miRNA:   3'- uuuuaUAUAGUUag----CGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 33327 0.72 0.950938
Target:  5'- gAGGAUGUcgCcgaCGCCCcuuGGCCGCCCc -3'
miRNA:   3'- -UUUUAUAuaGuuaGCGGG---CUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 45019 0.71 0.962841
Target:  5'- ---------gAcgCGCCCGACgGCCCa -3'
miRNA:   3'- uuuuauauagUuaGCGGGCUGgCGGG- -5'
5698 5' -48.7 NC_001806.1 + 137616 0.71 0.966316
Target:  5'- ------aGUUucgCGCCCuGGCCGCCCu -3'
miRNA:   3'- uuuuauaUAGuuaGCGGG-CUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 70324 0.71 0.969556
Target:  5'- ----cAUGUa---CGCCCuGGCCGCCCg -3'
miRNA:   3'- uuuuaUAUAguuaGCGGG-CUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 38476 0.73 0.925359
Target:  5'- ----aAUGUCAGUCGCCaugaccgggcuguCGGCUGCCg -3'
miRNA:   3'- uuuuaUAUAGUUAGCGG-------------GCUGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 134892 0.73 0.907732
Target:  5'- --------cUAAUCGCCuCGGCCGCCUc -3'
miRNA:   3'- uuuuauauaGUUAGCGG-GCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 14826 0.73 0.907732
Target:  5'- uAGGGUGUGUgcGUCGCCCGcgucuggaccaACCGCCa -3'
miRNA:   3'- -UUUUAUAUAguUAGCGGGC-----------UGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 41003 0.79 0.648856
Target:  5'- uGGGAUGUGUCcauggCGCCCGGguccuCCGCCCa -3'
miRNA:   3'- -UUUUAUAUAGuua--GCGGGCU-----GGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 70492 0.79 0.659647
Target:  5'- ------gGUCGGggacaCGCCCGACCGCCUg -3'
miRNA:   3'- uuuuauaUAGUUa----GCGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 94645 0.76 0.784223
Target:  5'- --------aCGAUCGCCCG-CCGCCUg -3'
miRNA:   3'- uuuuauauaGUUAGCGGGCuGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 26491 0.75 0.830727
Target:  5'- ------gGUCAGgagcgCGCCCGcgGCCGCCCc -3'
miRNA:   3'- uuuuauaUAGUUa----GCGGGC--UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 76213 0.75 0.847985
Target:  5'- uGGAUAUccgCGAUCGCCUGGaCGCCCu -3'
miRNA:   3'- uUUUAUAua-GUUAGCGGGCUgGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 22806 0.75 0.85629
Target:  5'- ------cGUCGAgUGCCUGGCCGCCUg -3'
miRNA:   3'- uuuuauaUAGUUaGCGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 106155 0.75 0.85629
Target:  5'- --------aCGGUCGagCCGACCGCCCa -3'
miRNA:   3'- uuuuauauaGUUAGCg-GGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 1700 0.74 0.882793
Target:  5'- ------cGUCGGUgguccccgaggccgcCGCCCGGCCGUCCa -3'
miRNA:   3'- uuuuauaUAGUUA---------------GCGGGCUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.