miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5701 3' -56.7 NC_001806.1 + 23083 0.66 0.902102
Target:  5'- cCGU-GCGcGCCGugaGCcUGGUCGCCGGg- -3'
miRNA:   3'- -GCAuUGC-CGGC---UGaAUCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 111505 0.66 0.902102
Target:  5'- uCGUGucuuuCGGUgGACcuugGGCCGUCGGg- -3'
miRNA:   3'- -GCAUu----GCCGgCUGaa--UCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 105143 0.66 0.902102
Target:  5'- gGggGCGGCCGu----GCCGCCccagGGUGc -3'
miRNA:   3'- gCauUGCCGGCugaauCGGCGG----CCAC- -5'
5701 3' -56.7 NC_001806.1 + 44792 0.66 0.902102
Target:  5'- gGUGAgGGCCGGgggGGUCGCCaGGa- -3'
miRNA:   3'- gCAUUgCCGGCUgaaUCGGCGG-CCac -5'
5701 3' -56.7 NC_001806.1 + 115450 0.66 0.902102
Target:  5'- aCGU--CGGCCGACaucGCCGCCa--- -3'
miRNA:   3'- -GCAuuGCCGGCUGaauCGGCGGccac -5'
5701 3' -56.7 NC_001806.1 + 21735 0.66 0.900214
Target:  5'- aCGacGCGGCCGaccacgcacgcgagGCgcgGGCCGUCGGg- -3'
miRNA:   3'- -GCauUGCCGGC--------------UGaa-UCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 24294 0.66 0.900214
Target:  5'- cCGUGcGCuGGCCGGCggcgcgggaccugcGCCGCaCGGUGc -3'
miRNA:   3'- -GCAU-UG-CCGGCUGaau-----------CGGCG-GCCAC- -5'
5701 3' -56.7 NC_001806.1 + 3189 0.66 0.895729
Target:  5'- --cGGCGGCCucGCU--GCCGCCGGc- -3'
miRNA:   3'- gcaUUGCCGGc-UGAauCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 36622 0.66 0.895729
Target:  5'- uGUGcAUGGCCGuuUcGGCCuGCCaGGUGg -3'
miRNA:   3'- gCAU-UGCCGGCugAaUCGG-CGG-CCAC- -5'
5701 3' -56.7 NC_001806.1 + 33975 0.66 0.889132
Target:  5'- uCGUGcgGGCCGGg--GGUCGCCGGg- -3'
miRNA:   3'- -GCAUugCCGGCUgaaUCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 3779 0.66 0.889132
Target:  5'- uCGUAucgGCGGCucauggccaCGGC--GGCCGCCGcGUGc -3'
miRNA:   3'- -GCAU---UGCCG---------GCUGaaUCGGCGGC-CAC- -5'
5701 3' -56.7 NC_001806.1 + 130484 0.66 0.889132
Target:  5'- gCGUcGCuGCCGGCccaGGCCGCCgagacggaggaGGUGg -3'
miRNA:   3'- -GCAuUGcCGGCUGaa-UCGGCGG-----------CCAC- -5'
5701 3' -56.7 NC_001806.1 + 45123 0.66 0.882313
Target:  5'- --cGACGGCCGugUgccAGUCGCCa--- -3'
miRNA:   3'- gcaUUGCCGGCugAa--UCGGCGGccac -5'
5701 3' -56.7 NC_001806.1 + 75310 0.66 0.882313
Target:  5'- gCGgccAUGGCCGACagcGCCGCgGGa- -3'
miRNA:   3'- -GCau-UGCCGGCUGaauCGGCGgCCac -5'
5701 3' -56.7 NC_001806.1 + 51794 0.66 0.875277
Target:  5'- cCGUGGCGGCCaag-UAcGCCGCCaccGUGg -3'
miRNA:   3'- -GCAUUGCCGGcugaAU-CGGCGGc--CAC- -5'
5701 3' -56.7 NC_001806.1 + 30034 0.66 0.875277
Target:  5'- gCGggGCGGCCGAgg-GGCCGgaCGGg- -3'
miRNA:   3'- -GCauUGCCGGCUgaaUCGGCg-GCCac -5'
5701 3' -56.7 NC_001806.1 + 88932 0.66 0.875277
Target:  5'- gGUGACGGUgGGgUUGaaccCCGCCGGg- -3'
miRNA:   3'- gCAUUGCCGgCUgAAUc---GGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 73560 0.67 0.868028
Target:  5'- ----cUGGCCGACgUGGCCGCCc--- -3'
miRNA:   3'- gcauuGCCGGCUGaAUCGGCGGccac -5'
5701 3' -56.7 NC_001806.1 + 100326 0.67 0.865813
Target:  5'- gCGgcAUGGCCGGCgacgAGCUgguuguaaugggagGCCGGg- -3'
miRNA:   3'- -GCauUGCCGGCUGaa--UCGG--------------CGGCCac -5'
5701 3' -56.7 NC_001806.1 + 22451 0.67 0.860572
Target:  5'- aCGcGGCGGCCGcCguggccaugAGCCGCCGa-- -3'
miRNA:   3'- -GCaUUGCCGGCuGaa-------UCGGCGGCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.