miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5707 3' -59.4 NC_001806.1 + 51896 1.05 0.00204
Target:  5'- cAGCACCGACACCGCACUGCGGCUCAAc -3'
miRNA:   3'- -UCGUGGCUGUGGCGUGACGCCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 24854 0.74 0.289139
Target:  5'- cGCAgCGGCACCGUGCUgGCGGCggCGGg -3'
miRNA:   3'- uCGUgGCUGUGGCGUGA-CGCCGa-GUU- -5'
5707 3' -59.4 NC_001806.1 + 69572 0.73 0.354531
Target:  5'- gGGCGCCagcgaGCACaCGCACggGCGGCUCu- -3'
miRNA:   3'- -UCGUGGc----UGUG-GCGUGa-CGCCGAGuu -5'
5707 3' -59.4 NC_001806.1 + 22980 0.72 0.370409
Target:  5'- cGCGCgUGGCugCGCgaGCUGCGGUUCGu -3'
miRNA:   3'- uCGUG-GCUGugGCG--UGACGCCGAGUu -5'
5707 3' -59.4 NC_001806.1 + 50663 0.72 0.395122
Target:  5'- cGCACCGGCGCCGggacgaCGCgGCGGC-CAc -3'
miRNA:   3'- uCGUGGCUGUGGC------GUGaCGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 144210 0.71 0.420876
Target:  5'- cGcCGCCGACACCGCAgaGcCGGCgcgCGc -3'
miRNA:   3'- uC-GUGGCUGUGGCGUgaC-GCCGa--GUu -5'
5707 3' -59.4 NC_001806.1 + 3594 0.71 0.456739
Target:  5'- cGGCGCCGuacccggcggGCACCGCGCgcucgcccggUGCGGCggcggCGAc -3'
miRNA:   3'- -UCGUGGC----------UGUGGCGUG----------ACGCCGa----GUU- -5'
5707 3' -59.4 NC_001806.1 + 119025 0.7 0.475275
Target:  5'- -aCGCCGugGCgGCGCUGCgccuugcguggGGCUCGGg -3'
miRNA:   3'- ucGUGGCugUGgCGUGACG-----------CCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 139767 0.7 0.475275
Target:  5'- uGC-CCGACGCCGCGCagGUGGUgCAu -3'
miRNA:   3'- uCGuGGCUGUGGCGUGa-CGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 145025 0.7 0.475275
Target:  5'- cGGC-CCGGCGCaUGCGCUGUGGUUUu- -3'
miRNA:   3'- -UCGuGGCUGUG-GCGUGACGCCGAGuu -5'
5707 3' -59.4 NC_001806.1 + 24166 0.7 0.484683
Target:  5'- cAGCGCCGGCgACCG----GCGGCUCAu -3'
miRNA:   3'- -UCGUGGCUG-UGGCgugaCGCCGAGUu -5'
5707 3' -59.4 NC_001806.1 + 56990 0.7 0.484683
Target:  5'- gAGCACCaggaGCGCCGCAUagGCGGCgccCAGu -3'
miRNA:   3'- -UCGUGGc---UGUGGCGUGa-CGCCGa--GUU- -5'
5707 3' -59.4 NC_001806.1 + 137350 0.7 0.513419
Target:  5'- gGGCGCC-ACG-CGCAUUGCGGCcCAAa -3'
miRNA:   3'- -UCGUGGcUGUgGCGUGACGCCGaGUU- -5'
5707 3' -59.4 NC_001806.1 + 31262 0.69 0.523153
Target:  5'- gGGCGCCcugGACuuCCGCAgcCUGCGGuCUCGg -3'
miRNA:   3'- -UCGUGG---CUGu-GGCGU--GACGCC-GAGUu -5'
5707 3' -59.4 NC_001806.1 + 79684 0.69 0.523153
Target:  5'- cGCGCCGACACCGCcggGCacGCUCc- -3'
miRNA:   3'- uCGUGGCUGUGGCGugaCGc-CGAGuu -5'
5707 3' -59.4 NC_001806.1 + 146676 0.69 0.523153
Target:  5'- gGGUGCCGAgACCGCagGCUGCGGaagucCAGg -3'
miRNA:   3'- -UCGUGGCUgUGGCG--UGACGCCga---GUU- -5'
5707 3' -59.4 NC_001806.1 + 50528 0.69 0.532958
Target:  5'- aGGCGCugggCGACACCGCagcgcgccgGCUGCucgccaacagcgGGCUCAAc -3'
miRNA:   3'- -UCGUG----GCUGUGGCG---------UGACG------------CCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 23228 0.69 0.542828
Target:  5'- cGCACCgGACGCCGCcgacgcGCUgGCGGC-CGc -3'
miRNA:   3'- uCGUGG-CUGUGGCG------UGA-CGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 126142 0.69 0.542828
Target:  5'- cGGCgagGCCGGCGCCGaCAC-GCGGCg--- -3'
miRNA:   3'- -UCG---UGGCUGUGGC-GUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 147983 0.69 0.56174
Target:  5'- aGGgGCCaGACGCCccccgcgGCGCcGCGGCUCGc -3'
miRNA:   3'- -UCgUGG-CUGUGG-------CGUGaCGCCGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.