Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5707 | 3' | -59.4 | NC_001806.1 | + | 133027 | 0.66 | 0.747496 |
Target: 5'- gAGCGCCuggucccgGACACgugcaacgccugcccUGCGCUGCGGCa--- -3' miRNA: 3'- -UCGUGG--------CUGUG---------------GCGUGACGCCGaguu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 137350 | 0.7 | 0.513419 |
Target: 5'- gGGCGCC-ACG-CGCAUUGCGGCcCAAa -3' miRNA: 3'- -UCGUGGcUGUgGCGUGACGCCGaGUU- -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 31262 | 0.69 | 0.523153 |
Target: 5'- gGGCGCCcugGACuuCCGCAgcCUGCGGuCUCGg -3' miRNA: 3'- -UCGUGG---CUGu-GGCGU--GACGCC-GAGUu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 79684 | 0.69 | 0.523153 |
Target: 5'- cGCGCCGACACCGCcggGCacGCUCc- -3' miRNA: 3'- uCGUGGCUGUGGCGugaCGc-CGAGuu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 146676 | 0.69 | 0.523153 |
Target: 5'- gGGUGCCGAgACCGCagGCUGCGGaagucCAGg -3' miRNA: 3'- -UCGUGGCUgUGGCG--UGACGCCga---GUU- -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 50528 | 0.69 | 0.532958 |
Target: 5'- aGGCGCugggCGACACCGCagcgcgccgGCUGCucgccaacagcgGGCUCAAc -3' miRNA: 3'- -UCGUG----GCUGUGGCG---------UGACG------------CCGAGUU- -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 23228 | 0.69 | 0.542828 |
Target: 5'- cGCACCgGACGCCGCcgacgcGCUgGCGGC-CGc -3' miRNA: 3'- uCGUGG-CUGUGGCG------UGA-CGCCGaGUu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 126142 | 0.69 | 0.542828 |
Target: 5'- cGGCgagGCCGGCGCCGaCAC-GCGGCg--- -3' miRNA: 3'- -UCG---UGGCUGUGGC-GUGaCGCCGaguu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 52492 | 0.69 | 0.56174 |
Target: 5'- gGGCGCCGuCGCUcCACuacgaguccauccUGCGGCUCGu -3' miRNA: 3'- -UCGUGGCuGUGGcGUG-------------ACGCCGAGUu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 24166 | 0.7 | 0.484683 |
Target: 5'- cAGCGCCGGCgACCG----GCGGCUCAu -3' miRNA: 3'- -UCGUGGCUG-UGGCgugaCGCCGAGUu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 56990 | 0.7 | 0.484683 |
Target: 5'- gAGCACCaggaGCGCCGCAUagGCGGCgccCAGu -3' miRNA: 3'- -UCGUGGc---UGUGGCGUGa-CGCCGa--GUU- -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 145025 | 0.7 | 0.475275 |
Target: 5'- cGGC-CCGGCGCaUGCGCUGUGGUUUu- -3' miRNA: 3'- -UCGuGGCUGUG-GCGUGACGCCGAGuu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 24854 | 0.74 | 0.289139 |
Target: 5'- cGCAgCGGCACCGUGCUgGCGGCggCGGg -3' miRNA: 3'- uCGUgGCUGUGGCGUGA-CGCCGa-GUU- -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 69572 | 0.73 | 0.354531 |
Target: 5'- gGGCGCCagcgaGCACaCGCACggGCGGCUCu- -3' miRNA: 3'- -UCGUGGc----UGUG-GCGUGa-CGCCGAGuu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 22980 | 0.72 | 0.370409 |
Target: 5'- cGCGCgUGGCugCGCgaGCUGCGGUUCGu -3' miRNA: 3'- uCGUG-GCUGugGCG--UGACGCCGAGUu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 50663 | 0.72 | 0.395122 |
Target: 5'- cGCACCGGCGCCGggacgaCGCgGCGGC-CAc -3' miRNA: 3'- uCGUGGCUGUGGC------GUGaCGCCGaGUu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 144210 | 0.71 | 0.420876 |
Target: 5'- cGcCGCCGACACCGCAgaGcCGGCgcgCGc -3' miRNA: 3'- uC-GUGGCUGUGGCGUgaC-GCCGa--GUu -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 3594 | 0.71 | 0.456739 |
Target: 5'- cGGCGCCGuacccggcggGCACCGCGCgcucgcccggUGCGGCggcggCGAc -3' miRNA: 3'- -UCGUGGC----------UGUGGCGUG----------ACGCCGa----GUU- -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 119025 | 0.7 | 0.475275 |
Target: 5'- -aCGCCGugGCgGCGCUGCgccuugcguggGGCUCGGg -3' miRNA: 3'- ucGUGGCugUGgCGUGACG-----------CCGAGUU- -5' |
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5707 | 3' | -59.4 | NC_001806.1 | + | 139767 | 0.7 | 0.475275 |
Target: 5'- uGC-CCGACGCCGCGCagGUGGUgCAu -3' miRNA: 3'- uCGuGGCUGUGGCGUGa-CGCCGaGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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