miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5707 3' -59.4 NC_001806.1 + 1918 0.68 0.592951
Target:  5'- cGGC-CCGAgGCCaGCACcgUGCGGCgCAGg -3'
miRNA:   3'- -UCGuGGCUgUGG-CGUG--ACGCCGaGUU- -5'
5707 3' -59.4 NC_001806.1 + 2494 0.67 0.664088
Target:  5'- cGuCGCCGcCGCCGCAC-GCGGCc--- -3'
miRNA:   3'- uC-GUGGCuGUGGCGUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 3594 0.71 0.456739
Target:  5'- cGGCGCCGuacccggcggGCACCGCGCgcucgcccggUGCGGCggcggCGAc -3'
miRNA:   3'- -UCGUGGC----------UGUGGCGUG----------ACGCCGa----GUU- -5'
5707 3' -59.4 NC_001806.1 + 3667 0.67 0.664088
Target:  5'- uGCGCCGGCGCCGgGgCUccccGCGGCccccgUCAGc -3'
miRNA:   3'- uCGUGGCUGUGGCgU-GA----CGCCG-----AGUU- -5'
5707 3' -59.4 NC_001806.1 + 4191 0.68 0.623415
Target:  5'- gGGC-CCGGCGCCGgGCcaCGGCUCc- -3'
miRNA:   3'- -UCGuGGCUGUGGCgUGacGCCGAGuu -5'
5707 3' -59.4 NC_001806.1 + 4322 0.67 0.664088
Target:  5'- cGCgGCCGGCcaccGCCGCGCgggcccgGCGGCgcUCGAu -3'
miRNA:   3'- uCG-UGGCUG----UGGCGUGa------CGCCG--AGUU- -5'
5707 3' -59.4 NC_001806.1 + 4460 0.67 0.698357
Target:  5'- gGGCuGCCGGCGCCGCGCUcgacggaccccgcccGaCGGCcCGc -3'
miRNA:   3'- -UCG-UGGCUGUGGCGUGA---------------C-GCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 6233 0.67 0.684303
Target:  5'- cGGCGUCGGCAUCGCgACgcccCGGCUCGGg -3'
miRNA:   3'- -UCGUGGCUGUGGCG-UGac--GCCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 19070 0.67 0.694351
Target:  5'- cGCACCGAgCGCCguaGCAUUGCauuugGGCUUGGg -3'
miRNA:   3'- uCGUGGCU-GUGG---CGUGACG-----CCGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 21908 0.66 0.714285
Target:  5'- gAGCGCCGccggGC-CCGCGCgGCGGUg--- -3'
miRNA:   3'- -UCGUGGC----UGuGGCGUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 22980 0.72 0.370409
Target:  5'- cGCGCgUGGCugCGCgaGCUGCGGUUCGu -3'
miRNA:   3'- uCGUG-GCUGugGCG--UGACGCCGAGUu -5'
5707 3' -59.4 NC_001806.1 + 23228 0.69 0.542828
Target:  5'- cGCACCgGACGCCGCcgacgcGCUgGCGGC-CGc -3'
miRNA:   3'- uCGUGG-CUGUGGCG------UGA-CGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 23837 0.66 0.704348
Target:  5'- gGGC-CCGcuGCGCCGCAUgGCGGCc--- -3'
miRNA:   3'- -UCGuGGC--UGUGGCGUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 24166 0.7 0.484683
Target:  5'- cAGCGCCGGCgACCG----GCGGCUCAu -3'
miRNA:   3'- -UCGUGGCUG-UGGCgugaCGCCGAGUu -5'
5707 3' -59.4 NC_001806.1 + 24409 0.68 0.603087
Target:  5'- cGCGCCGcCGCUGCGCcugugccGCGGCggCAAc -3'
miRNA:   3'- uCGUGGCuGUGGCGUGa------CGCCGa-GUU- -5'
5707 3' -59.4 NC_001806.1 + 24525 0.67 0.694351
Target:  5'- cGGCGCUGGacgGCCGgGCgGCGGcCUCGGg -3'
miRNA:   3'- -UCGUGGCUg--UGGCgUGaCGCC-GAGUU- -5'
5707 3' -59.4 NC_001806.1 + 24854 0.74 0.289139
Target:  5'- cGCAgCGGCACCGUGCUgGCGGCggCGGg -3'
miRNA:   3'- uCGUgGCUGUGGCGUGA-CGCCGa-GUU- -5'
5707 3' -59.4 NC_001806.1 + 31262 0.69 0.523153
Target:  5'- gGGCGCCcugGACuuCCGCAgcCUGCGGuCUCGg -3'
miRNA:   3'- -UCGUGG---CUGu-GGCGU--GACGCC-GAGUu -5'
5707 3' -59.4 NC_001806.1 + 33740 0.68 0.581835
Target:  5'- cGCGCCGGCuCUGCggugucggcggcgGCUGCGGCg--- -3'
miRNA:   3'- uCGUGGCUGuGGCG-------------UGACGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 50151 0.68 0.603087
Target:  5'- cGGCcCCGACGCCGCGgUGUuccgcaGCUCGc -3'
miRNA:   3'- -UCGuGGCUGUGGCGUgACGc-----CGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.